Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2670 ATGCCACCGAAGTTCGATCCCTCTCAGGTGGTGGACGTCTACGTACGTGTCACCGGCGGCGAGGTCGGCGCAGCAAGTTCCCTCGCACCCAAGATCGGTCCACTCGGTCTGTCCCCAAAGAAGATCGGAGAAGACATCGCGAAGGAGACCGCGAAGGATTGGAAGGGTCTGAGGGTGACAGTGAAGCTCACCGTGCAGAATCGTCAGGCGAAGGTGTCGGTGGTGCCATCCGCAGCGGCGCTGGTGATCAAGGCGTTGAAGGAGCCGGAGAGGGACAGGAAGAAGACGAAGAACATCAAGCACAATGGGAACATCTCGCTTGATGATGTTGTGGAGATTGCTAGGGTGATGAAGCCGAGGTCCATGGCGAAGGATCTGAGTGGGACTATCAAGGAGATTCTTGGGACTTGTGTGTCTGTTGGGTGTACGGTTGATGGGAAGGACCCTAAGGATCTGCAGCAGGAGGTTACTGATGGTGATGTTGAGGTTCCTCTAGAATAA 501 0.5549 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVVEIARVMKPRSMAKDLSGTIKEILGTCVSVGCTVDGKDPKDLQQEVTDGDVEVPLE* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2670 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lja5g2670 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Lja5g2670 166 Gene3D - 82 164 IPR036769 -
Lja5g2670 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Lja5g2670 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Lja5g2670 166 PANTHER 60S RIBOSOMAL PROTEIN L12-3-LIKE 1 166 - -
Lja5g2670 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 166 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lja5g2670 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
Lja5g2670 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Lja5g2670 166 Gene3D - 1 81 IPR036796 -
Lja5g2670 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Lja5g2670 166 MobiDBLite consensus disorder prediction 145 166 - -
Lja5g2670 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2670 Lja-Chr5 53267989 53268822 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2670 1 164 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 88.415 9.92e-108 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2670 K02870 - twl:119990680 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2670 5 53267989 53268822 Lja5g1042 5 10574139 10576851 ECH
Lja5g2670 5 53267989 53268822 Lja5g2670 5 53267989 53268822 ECH
Lja5g2670 5 53267989 53268822 Lja3g0839 3 8523761 8524693 ECH