Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2666 ATGGACTCAAAGGAGAAATCAGAGGAAGTGGATAGGTGTTTGGATCCTCAGCTATGGCATGCTTGTGCTGGTGGAATGGTACAGATGCCAAGGGTGAACACTAAAGTTTATTACTTTCCTCAGGGTCATGCTGAACATGCATGTGAACCTGTTAATTTCAGGAATTGCCCAAAGTTTCCACCTTTGGTTCCATGCAGGGTGGATTCTATCAAATACATGGCTGATCCTGAAACAGATGAGGTTTATGCAAAAATCAGGCTTGTTCCTTTGAATGGAAATGATGCTGGTTGTGACAGTGATGTTGTTGGTGGAAATGGAAATGACATCATCAATGGGTGTGAAACTCAGGAAAAACCTCTTTCATTTGCAAAGACATTGACCCAATCTGATGCTAACAATGGGGGAGGGTTTTCTGTTCCTAGGTACTGTGCAGAGACAATTTTCCCTCGTTTGGACTTTTCAGCAGACCCTCCTGTTCAGAACATTCTTGTGAAAGATGTTCACGGCGAGACGTGGAAGTTCAGGCATATTTATAGGGGCACGCCGAGGCGGCATTTGCTCACTACCGGGTGGAGTAGTTTTGTGAATCATAAGAAGCTTGTTGCAGGAGATTCCATTGTGTTTCTGAGAGCAGAGAATGGGGATCTCTGTGTTGGGATTCGACGAGCGAAAAAAGGCGGTAGTGAACCTGAGCGTGGTGGTTCCTCTGGGTGGAATCCTGAAGATCCTTATGGTAACAGAATCCTGAGAAATAGTAATAATAGCAATGTGTTGAACCCTAGTGAGAATATGTTGGGGACAGTGAAGGTGAGGGCTGAAGCGGTTATTGAAGCTGCCAATCTCGCTGCAAATAAGGAACCTTTTGAGGTTGCTTACTACCCTAGGGGAAGTACTCCAGAGTTTTGTGTGAAGACCTCTTTGGTTGAATCAGCAATGCAGATTAGGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTCGAAACCGAGGATTCTTCGCGGATAAGTTGGTTTATGGGGATCGTATCTTCGGTTCAGGTTGCCGATCCACTTCTCTGGCCTAACTCACCTTGGAGGCTTCTCCAGGTTACATGGGATGAACCAGATTTACTTCAAAATGTGACAAGGGTGAGTCCATGGTTGGTTGAATTGGTAGCAAACATTCCTCCCATAAACCTTTCCCCTTTCTTACCGGCGCGGAAGAAGATGAGATTGTCTCAACACCCAGACTTCCCCTTTGACGGCCACATTCCTGTGCCGACATTTCCTCTAGGTCCCCGCAGCCCATTTGGTTGTCTACCCGAAAGCACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTAACCTTATCAGATCATCACCACCTCAATAAAGTGCACTCAGGTCTATTTCCGGCTGGTTTTCCGCTGCTCAATCACTCTGCTGCACCACCAAGTGTCTCCAGCTACCTAATATCGCAAAAGTCCGGCATGACTAGTGAGAATGTCTCTTGCTTGCTGTCCATGGCAGGTTCTACCAAGTCTTCAAATTCAAAGAAACAGGATGATGAAAAGAGACCCCAGCTTGTGCTTTTCGGCAAAACAATTTCACCGAGTAGCAGATTTGGAGGTCACTATGAAGTTCTTATGGAATCAGAAGATGTTGGTCAGACAATTGACCTCTCATTACATGTATGA 1683 0.4611 MDSKEKSEEVDRCLDPQLWHACAGGMVQMPRVNTKVYYFPQGHAEHACEPVNFRNCPKFPPLVPCRVDSIKYMADPETDEVYAKIRLVPLNGNDAGCDSDVVGGNGNDIINGCETQEKPLSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDFSADPPVQNILVKDVHGETWKFRHIYRGTPRRHLLTTGWSSFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGSEPERGGSSGWNPEDPYGNRILRNSNNSNVLNPSENMLGTVKVRAEAVIEAANLAANKEPFEVAYYPRGSTPEFCVKTSLVESAMQIRWCSGMRFKMAFETEDSSRISWFMGIVSSVQVADPLLWPNSPWRLLQVTWDEPDLLQNVTRVSPWLVELVANIPPINLSPFLPARKKMRLSQHPDFPFDGHIPVPTFPLGPRSPFGCLPESTPAGMQGARHAHYGLTLSDHHHLNKVHSGLFPAGFPLLNHSAAPPSVSSYLISQKSGMTSENVSCLLSMAGSTKSSNSKKQDDEKRPQLVLFGKTISPSSRFGGHYEVLMESEDVGQTIDLSLHV* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2666 560 CDD B3_DNA 121 222 IPR003340 GO:0003677
Lja5g2666 560 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Lja5g2666 560 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 532 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lja5g2666 560 PANTHER AUXIN RESPONSE FACTOR 4 532 - -
Lja5g2666 560 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lja5g2666 560 MobiDBLite consensus disorder prediction 224 255 - -
Lja5g2666 560 Gene3D - 120 224 IPR015300 -
Lja5g2666 560 Gene3D - 315 388 - -
Lja5g2666 560 SMART B3_2 122 224 IPR003340 GO:0003677
Lja5g2666 560 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Lja5g2666 560 SUPERFAMILY DNA-binding pseudobarrel domain 117 225 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2666 Lja-Chr5 53206624 53209573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2666 10 558 B3 DNA Binding Superfamily AT4G30080 54.160 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lja5g2666 B3 3.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2666 - - gmx:100796522 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2666 5 53206624 53209573 Lja5g0881 5 8489197 8492954 ECH
Lja5g2666 5 53206624 53209573 Lja1g0858 1 8432204 8436441 ECH
Lja5g2666 5 53206624 53209573 Lja5g2666 5 53206624 53209573 ECH
Lja5g2666 5 53206624 53209573 Lja3g0846 3 8599761 8603774 ECH