LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g2662	ATGGCTTCTGATATGTCAAGATCTGTAAGATTTCATGATGATCCTGAAACAGAGAACGTAAAAGAAAGCCCAGAAAGTAACTGGTCAATTCTGGCCTATGAGATGAGTGACAAAAGGAAGTTAAGGAAGGATGCAAGAGAAGTTTCCAGGGTATTTTCTGAGGATTATGATGCAGCAGAGATGTTGGTGTTTGATCCTAGAGGGCCTAGAATAAATAGATGGAACAAAATTTTCTTAGCAGCTTGTTTGGTTTCATTAGTTGTGGATCCCTTATTCTTTTACTTACCAGTGGCTAAGAAAGATAAGTGCATTGATATGTCTCTTGGACTTGAAGTGTCCCTAACCATAATCCGATCAATGGTTGATGCATTTTACATTCTTCAGATTTATGTTAGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGCGTTTCGGGCAGAGGAGAGCTTGTTTTAGACTCTTCAAAGATTGCATCAAAGTACCTCAGCAGAGACTTCTGGATTGACCTAGTGGCTGCTCTACCACTTCCACAGGTACTGATTTGGGCAGTGATTCCAAATCTAAAGGGTTCACAAATGATTGCTTCAAGGCAGATTTTTCGCCTTGTAGCCATTTTCCAGTACCTCTTGAGGTTGTATCTTCTTTATCCTCTGTCTTCTGAAATCGTCAAGGCAAATGGGGTAATGATAGAAAAAGCTTGGGCCGGGGCAGCATATAATCTGACTCTCTACATGATGGCAAGTCACGTTTTAGGATCCACTTGGTACCTGTTATCGATTGAACGGCAAGATGAATGCTGGAAGAAAGCTTGTGCACTTCAGTACCCAAACTGCAAGTATCATTATCTTGAATGTCAAAGCATAGGTGACCCAGATAGAGCTGCTTGGTTCAGATCAAGCAATCTCTCAGGTCTATGTGACCAGAACAGTGATTTCTTTCAATTTGGCATTTTTGCTGATGCTCTTAATCTAGAAATTACGAGCTCAAAATTCTTCAACAAATACTGTTATTGTCTTTGGTGGGGACTGAGGAATCTAAGCTCTGTTGGACAGAATCTCATAACAAGCACACATGTTGCAGAGATCAATTTTGCTGTGATTGTTGCGATTCTTGGATTGGTGCTTTTTGCATTGCTCATAGGCAATATGCAAACCTACCTACAATCCACCACTATGCGGCTAGAAGAATGGAGAATAAGAAGGACAGACACGGAAAGATGGATGCATCACAGGCAGCTCCCTGGTTACCTGAAGCAAAGTGTGCGCCGCCATGACCAATTCAGATGGGTAGCTACTCGAGGAGTAGACGAGGAAGCTATTCTCAGAGACCTTCCTGCGGATCTCAGACGCGACATAAAACGCCACCTTTGCCTTAATCTAGTCAGACAAGTACCATTATTTGATGACATGGATGAGAAGATGCTAGATGCAATATGCGAAAGGCTGAAACCTTCTTTGTGCACACCAGGCACGTGCCTAGTCCGTGAAGGTGACCCTGTCAATGAGATGCTCTTCATCGTAAGAGGTCGCCTAGACTCTTGCACCACCAACGGCGGTAGGACCGGGTTCTTTAACAGCTCCGGACTCGGCTCCGGCGACTTCTGCGGCGAAGAGCTTCTGCCATGGGCCTTGGACCCTCGTTCAACCATTGTCCTTCCCTCCTCAACTCGAACCGTGGAAGCCATAACCGAAGTTGAAGCTTTCGCGCTCATAGCCGAGGACTTGAAGTTCGTGGCGACGCAGTTCCGGAGGCTGCACTGCAAGCAGCTGAGGCACACGTTCAGGTTCCATTCCCATCAGTGGAGGACGTGGGCTGCTTGTTTCATACAAGCTGCATGGTTCAGGTATAAGAGAATGAAAGAAACGAGTGAGCTGAAGAGCAAGGAGAATATGATGGTGTCCTATGATTATGGGCCTGGAAGTGGTGGCAATGAACATTTCTCTGCACCCTTGCAGGGCCCATTGGGCTCAAACTTTTATGCTGCAAAGCTTGTGGCTAGCCCAAGGAGAGGTAGGAGCTTGAGATATGGTTCTGAGCTTGAGATTCTTGGGGCATTAAGGAAGCCCCTTGAGCCTGATTTCACTCATGATGAAAGTTGA	2100	0.4529	MASDMSRSVRFHDDPETENVKESPESNWSILAYEMSDKRKLRKDAREVSRVFSEDYDAAEMLVFDPRGPRINRWNKIFLAACLVSLVVDPLFFYLPVAKKDKCIDMSLGLEVSLTIIRSMVDAFYILQIYVRFQTAYIAPSSRVSGRGELVLDSSKIASKYLSRDFWIDLVAALPLPQVLIWAVIPNLKGSQMIASRQIFRLVAIFQYLLRLYLLYPLSSEIVKANGVMIEKAWAGAAYNLTLYMMASHVLGSTWYLLSIERQDECWKKACALQYPNCKYHYLECQSIGDPDRAAWFRSSNLSGLCDQNSDFFQFGIFADALNLEITSSKFFNKYCYCLWWGLRNLSSVGQNLITSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTERWMHHRQLPGYLKQSVRRHDQFRWVATRGVDEEAILRDLPADLRRDIKRHLCLNLVRQVPLFDDMDEKMLDAICERLKPSLCTPGTCLVREGDPVNEMLFIVRGRLDSCTTNGGRTGFFNSSGLGSGDFCGEELLPWALDPRSTIVLPSSTRTVEAITEVEAFALIAEDLKFVATQFRRLHCKQLRHTFRFHSHQWRTWAACFIQAAWFRYKRMKETSELKSKENMMVSYDYGPGSGGNEHFSAPLQGPLGSNFYAAKLVASPRRGRSLRYGSELEILGALRKPLEPDFTHDES*	700

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g2662	699	MobiDBLite	consensus disorder prediction	1	25	-	-
	Lja5g2662	699	Gene3D	-	77	389	-	-
	Lja5g2662	699	Pfam	Ion transport protein	74	393	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Lja5g2662	699	Gene3D	Jelly Rolls	464	584	IPR014710	-
	Lja5g2662	699	CDD	CAP_ED	466	585	IPR000595	-
	Lja5g2662	699	Gene3D	Helix hairpin bin	393	457	-	-
	Lja5g2662	699	PRINTS	EAG/ELK/ERG potassium channel family signature	129	138	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lja5g2662	699	PRINTS	EAG/ELK/ERG potassium channel family signature	379	388	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lja5g2662	699	PRINTS	EAG/ELK/ERG potassium channel family signature	335	352	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lja5g2662	699	PRINTS	EAG/ELK/ERG potassium channel family signature	361	372	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lja5g2662	699	PRINTS	EAG/ELK/ERG potassium channel family signature	429	436	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lja5g2662	699	PRINTS	EAG/ELK/ERG potassium channel family signature	246	256	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lja5g2662	699	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	8	696	-	-
	Lja5g2662	699	SMART	cnmp_10	466	597	IPR000595	-
	Lja5g2662	699	MobiDBLite	consensus disorder prediction	7	21	-	-
	Lja5g2662	699	ProSiteProfiles	cAMP/cGMP binding motif profile.	466	551	IPR000595	-
	Lja5g2662	699	SUPERFAMILY	cAMP-binding domain-like	396	586	IPR018490	-
	Lja5g2662	699	SUPERFAMILY	Voltage-gated potassium channels	65	388	-	-
	Lja5g2662	699	PANTHER	PROTEIN CNGC15A	8	696	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g2662	Lja-Chr5	53160509	53166398	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja5g2662	35	697	Ion Channels	AT2G28260	63.499	0.0	878

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g2662	K05391		-	gmx:100815543	1174.07

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja5g2662	5	53160509	53166398	Lja5g2662	5	53160509	53166398	ECH