Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2660 ATGTCTACTATCCCCTACTACCTCTGCAACTTCCCTAGCTCTTCCAATTCTCCAAACTCGACAACCTCTTGTGTTTCTTCCTTCAACGCTGTCACTGTCGCCGTCTCGCTTCGTACCCCTGTTGCCGTCTCCTCCGAGTTCGACCGGGAAGAGGACACCTTCAGCGACGATGTAGAAACCCGCTCCTTCGCCCCTGACCACAATGTCTTCGTCGGAAGCCTTCCTTTCAGCGTCGACGGTGCCCAGCTCGCTGAGCTCTTCCAAGACGCTGGAAACGTTGAAGAAGTTGAGATGAATTATGATAAAATGACTGGAGATAGTATGGGATTTGCTTTTGTGACTATGTCTTCTGCTGCTGAAGCTGACGCAGCTGCTCAGCAGTTCAATAACTATGAACTTGAGGGAAGGCCATTGAGAGTAATTTCTGAACCACCACCACCTCCTAAAAACGAGAACCGGGGTTTTAATGAGAATCCTCGTTTTAGGAATAATTCTTTCAACAGAGGTGGTTCATATAGTTACAGAGGTGGTTCAGATGGTTACAGAGGAGGTGGTTCAGATAGTTACAGAGGTGGTTCAGATGGTTACAGAGGAGGTGGTTCAGATGGTTACAGAGGGGGTGGCTCTTCTTCATACAGCGAAAACCGTGTTCATGTAGGTAATCTTGCTTGGGGTGTTGACAACGCAGCACTTGAGTCATTGTTTCGTGAACAAGGAAGGGTTGTGGATGCAAAGGTTATCTATGATAGGGAAAGTGGAAGATCAAGAGGCTTTGGATTTGTGACTTTCAGCAGCCCTGATGAGGTCAACAGTGCAATTCGGTCCCTAGATGGAGCGGACTTGAATGGCAGAGCTATTAAGGTCTCACAAGCAGATTCTAAGCCCAAGCGCGAATTTTGA 900 0.4778 MSTIPYYLCNFPSSSNSPNSTTSCVSSFNAVTVAVSLRTPVAVSSEFDREEDTFSDDVETRSFAPDHNVFVGSLPFSVDGAQLAELFQDAGNVEEVEMNYDKMTGDSMGFAFVTMSSAAEADAAAQQFNNYELEGRPLRVISEPPPPPKNENRGFNENPRFRNNSFNRGGSYSYRGGSDGYRGGGSDSYRGGSDGYRGGGSDGYRGGGSSSYSENRVHVGNLAWGVDNAALESLFREQGRVVDAKVIYDRESGRSRGFGFVTFSSPDEVNSAIRSLDGADLNGRAIKVSQADSKPKREF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2660 299 Gene3D - 44 210 IPR012677 -
Lja5g2660 299 Gene3D - 211 299 IPR012677 -
Lja5g2660 299 SUPERFAMILY RNA-binding domain, RBD 63 155 IPR035979 GO:0003676
Lja5g2660 299 SUPERFAMILY RNA-binding domain, RBD 212 297 IPR035979 GO:0003676
Lja5g2660 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 139 IPR000504 GO:0003723
Lja5g2660 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 287 IPR000504 GO:0003723
Lja5g2660 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Lja5g2660 299 MobiDBLite consensus disorder prediction 137 212 - -
Lja5g2660 299 SMART rrm1_1 68 141 IPR000504 GO:0003723
Lja5g2660 299 SMART rrm1_1 216 289 IPR000504 GO:0003723
Lja5g2660 299 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 18 299 - -
Lja5g2660 299 MobiDBLite consensus disorder prediction 157 172 - -
Lja5g2660 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 145 IPR000504 GO:0003723
Lja5g2660 299 PANTHER OS02G0815200 PROTEIN 18 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2660 Lja-Chr5 53127204 53144524 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2660 217 298 Eukaryotic Initiation Factors Gene Family AT4G34110 37.805 1.53e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2660 5 53127204 53144524 Lja5g2660 5 53127204 53144524 ECH
Lja1g0904 1 8845507 8848265 Lja5g2660 5 53127204 53144524 PCT