Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2657 ATGGCTGCTGCAACAACAATCATTACCAATGGCAACGGCCACGGCCACCACGATGACGCCGCCTTTTGTGTCAACAACGGTGTTGGACTAGGAGTAGGACCTACTACTCCTCATCATGACCCTCTCAACTGGGGGGCTGCGGCGGAGGCGATGAAGGGTAGCCACCTTGATGAAGTGAAGCGTATGGTGGAGGAGTACCGGAAGCCGGTGGTCCGTCTCGGTGGTGAGACTTTGACGATCGCTCAGGTGGCTGCTGTGGCGGCTCATGACCAGGGTGCTGTGACGGTGGAGCTCTCGGAGTCGTCGAGGGCTGGGGTGGAGGCTAGTAGGAACTGGGTGAGGGATAGTATGAATAAAGGGACTGATAGCTATGGTGTCACCACCGGGTTTGGTGCCACCTCTCACCGCCGGACTAAGCAGGGTGGTGCCTTGCAGAAGGAGCTTATTAGGTTCTTGAATGCTGGAATATTTGGCAATGGAACAGAATCCAATTGCACACTACCACACACAGCAACAAGAGCAGCCATGCTTGTTAGAATCAATACTCTTCTTCAAGGCTACTCAGGTATCCGGTTTGAGATTTTGGAAGCCATAACCAAGCTCATAAACAGCAACGTTGCTCCATGCTTGCCTCTTCGCGGCACAATCACAGCTTCCGGTGATCTTGTTCCACTTTCATACATTGCCGGTTTGCTAACCGGCCGACCGAACTCCAAGGCTGTCGGCCCCTCCGGCGAGATTCTTACTGCCAAGGAAGCCTTTGAACTGGCCAACATTGGTCATGATTTCTTTGAATTGGAGCCCAAGGAAGGCCTTGCACTTGTTAACGGTACCGCGGTTGGTTCTGGCTTGGCTGCTATTGTTCTCTTTGAGGCCAACATACTTGCTGTCTTGTCTGAGCTTATTTCAGCGATTTTCGCTGAAGTTATGCTCGGCAAACCGGAGTTTACCGACCATTTGACTCATAAGTTAAAGCACCACCCGGGGCAAATTGAGGCTGCAGCTATCATGGAACACATTTTGGATGGCAGCTCTTACATAAAAGCAGCTAAGAAGTTGCATGAGGTGGATCCTTTGCAAAAGCCTAAACAAGATAGGTATGCGCTTAGAACTTCACCCCAATGGCTTGGTCCTCTTATTGAAGTGATTCGATTCTCAACCAAGTCCATTGAGAGAGAGTTGAACTCAGTCAACGACAACCCTTTGATTGATGTCTCTAGAAACAAGGCCTTGCATGGTGGTAACTTTCAAGGAACCCCCATTGGAGTTTCAATGGACAACACACGTTTGGCTCTTGCATCTATTGGTAAACTCCTGTTTGCTCAATTCTCTGAGCTTGTTAATGATTTTTACAACAATGGGTTGCCTTCAAATCTTTATGGTAGTAGAAACCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCGTCTTATTGCTCTGAACTCCAATATCTTGCAAACCCGGTGACAACCCATGTTCAGAGCGCTGAGCAGCATAACCAAGATGTGAACTCATTGGGTTTGATTTCGTCTAGGAAAACAAATGAGGCTATTGAGATCCTCAAGCTCATGTCGTCCACGTTCTTGGTCGCGCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGCACACTGTCAAGAACACTGTTAACCAAGTTGCTAAGAGGACACTCACAACTGGTGTCAATGGGGAGCTTCATCCATCAAGGTTCTGTGAGAAAGATTTGCTGACAGTTGTTGATAGGGAGGATGTTTTTGCCTACATTGATGACCCTTGCAGCGGCACATACCCATTGATGCAGAAACTGAGACAATCACTAGTGGATCATGCATTGGAAAATGCAGATGCTGAGAAGAACGTGAACACATCCATCTTTCAAAAGATTGCTATCTTTGAGGATGAATTGAAGGCTATCTTGCCTAAGGAGGTTGAAAGTGCCAGGGTTGCATATGACAATGGCGAAAGCGCGATCCCAAACAAGATCAAGGAATGCAGGTCTTACCCGTTGTACAAGTTTGTGAGAGAAGAGTTGGGAACTGGGTTGCTGACCGGAGAAAAGGTTAAGTCACCAGGGGAGGACTTTGACAAACTGTTCACAGCAATGTGCCAAGGTAAAATCATTGATCCTATCTTGGAATGCCTTGGGGAATGGAATGGTGCTCCTCTTCCAATTTGTTAG 2199 0.4789 MAAATTIITNGNGHGHHDDAAFCVNNGVGLGVGPTTPHHDPLNWGAAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTIAQVAAVAAHDQGAVTVELSESSRAGVEASRNWVRDSMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNCTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLINSNVAPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEILTAKEAFELANIGHDFFELEPKEGLALVNGTAVGSGLAAIVLFEANILAVLSELISAIFAEVMLGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIERELNSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLYGSRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLVALCQAIDLRHLEENLKHTVKNTVNQVAKRTLTTGVNGELHPSRFCEKDLLTVVDREDVFAYIDDPCSGTYPLMQKLRQSLVDHALENADAEKNVNTSIFQKIAIFEDELKAILPKEVESARVAYDNGESAIPNKIKECRSYPLYKFVREELGTGLLTGEKVKSPGEDFDKLFTAMCQGKIIDPILECLGEWNGAPLPIC* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2657 732 CDD PAL-HAL 76 542 IPR001106 -
Lja5g2657 732 SUPERFAMILY L-aspartase-like 40 732 IPR008948 GO:0003824
Lja5g2657 732 Gene3D Fumarase/aspartase (Central domain) 279 727 - -
Lja5g2657 732 Gene3D - 33 278 IPR024083 -
Lja5g2657 732 Coils Coil 606 626 - -
Lja5g2657 732 Gene3D - 545 666 IPR023144 -
Lja5g2657 732 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 214 230 IPR022313 GO:0016841
Lja5g2657 732 Pfam Aromatic amino acid lyase 78 554 IPR001106 -
Lja5g2657 732 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 37 732 - -
Lja5g2657 732 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 40 721 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lja5g2657 732 PANTHER HISTIDINE AMMONIA-LYASE 37 732 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2657 Lja-Chr5 53036812 53041051 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2657 40 732 Monolignol Biosynthesis Gene Families AT2G37040 82.395 0.0 1214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2657 K10775 - gmx:100811101 1255.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2657 5 53036812 53041051 Lja5g0891 5 8627176 8633595 ECH
Lja5g2657 5 53036812 53041051 Lja1g0850 1 8282377 8290127 ECH
Lja5g2657 5 53036812 53041051 Lja5g2657 5 53036812 53041051 ECH
Lja1g0851 1 8286825 8318153 Lja5g2657 5 53036812 53041051 PCT