Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2653 ATGAAGTCAAGATTTGTAAGAGGGTGCCTTAACAAGTGCAAGAAAATGGGAAGCAGAGTCAAAATCTGTGCTGCTTGTGAGAACTGCTGCAAATGGGCTTTGTGGTCTTCCCTGCATGAAAGCTGCTCCATCCCAAGTGATGTTCCAAAGGGACACATGGTTGTTTACGTTGGCGAGAACCGTGCGAGATATGTGATCAAGATTGCTTTGCTCCACCATCCGCTCTTCAGGGCCTTGCTGGATCAGGCTCAGGAAGAGTATGATTTCATTGCAGATTCAAAACTCTGCATTCCTTGCGATGAAAACCTCTTCATCAACGTCCTTCGCTGCGCCGGCTCCCCGCAGAACCAAAGGGTGTGTCTGTGTTTGTGA 372 0.4839 MKSRFVRGCLNKCKKMGSRVKICAACENCCKWALWSSLHESCSIPSDVPKGHMVVYVGENRARYVIKIALLHHPLFRALLDQAQEEYDFIADSKLCIPCDENLFINVLRCAGSPQNQRVCLCL* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2653 123 Pfam Auxin responsive protein 37 110 IPR003676 GO:0009733
Lja5g2653 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 2 123 IPR003676 GO:0009733
Lja5g2653 123 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 2 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2653 Lja-Chr5 52996573 52997326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2653 10 118 Calmodulin-binding Proteins AT4G34750 42.105 3.56e-23 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2653 K14488 - gmx:100812927 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2653 5 52996573 52997326 Lja5g2653 5 52996573 52997326 ECH
Lja1g0843 1 8238794 8239557 Lja5g2653 5 52996573 52997326 PCT