Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2652 ATGGATCGGAAAGATTATTTGCGTAAGTGTTCCAATATGAAATGCCAAAGGGTTAAAGTGGATGAATCTGTACCTATCCTCCAAGATGAAGTAATGGAAGTTGAGCATTTGCTTGCAGAACCTAGAAATGATCATGTTTCAGTGGATGGCAGTTTATATCCTCATACAACTTTGAATGGCAAGGATGATTTGGAACTGGAGGTCCTTGACGGATTGCTGGATGATGTTGAAATCAATGATCTCGGAGGAACTGATTTTTTCCCTGGTTCATGTGGAGAGTATTTTTTGGATTTTGAATTTGCCAACATAGCTGAGACACCAGGCTATGATCCTTGTGAAGGTTCATTTTTGCAAAACTCAAGTTCGGAAAGTCATTCTTCAGGCTTAAGTGGAAGTAGCATAATTGGTGGCGTCTCAGAATCAACAAAAATACCCATTTCACAATCTGAATGCAAAAAAAATTCTCATGGTGCCTTCAGGAACCATCCAGGTCAACCATCAAATGTGGATTGCATGTACAACATTTCACTTGATTTACATCATTTGCATGGGTTGAATAATGATCATCCTTTGACTGGTGATATATTGTCATACGAGAAGGAAGATATTTCTGTCGAGAAATGCAAAACTTCTGCACCCAGAGAGAAGAGATTCCGAAAGCCCACTCAGAGGTATATAGAAGAATTTTCAAATTCGAGGTCAAAGGAAAAAGTACCCACTACTGCTACCAAAAATAAAAATTTGGGTGTGTCATCTTGTGATGAACTTCAAATAAAAATTAAAGCATTGAAAAAAATTACTGGCAAGAAGTCTAGTGATGGAAATAGTGATGTGACGCTTTCTGAGCTGCAAGTTCGCAGGGGACGTCCAAAGAAAGAGAAACTCGAGTATGACAACGGGCCATCTCCATCGGAGTCTGGGGATGAATATTTCACACCAAAAAGTTCGAGAGGGAAAGATCGAAGACAGCATCAGAGAATGTGGACTCTCTCTGAAGTGGTAAATTTGGTTGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATCAAGAGGTGTTTGTTTTCTTCTTCAAGCTACCGAACTCCCATTGATCTCAGGGACAAGTGGCGTAACCTTTTAAGATCCAGCTCTGCACAGAAATGCAGCAAGAAAGAGGCTGAGGAAAACGACGACATTGCCCTACGTCCCTTACCATCTAATGTGGCACGCCGTGTGCGGGAATTGGCTAAAATTCACCCATACCCAAGGCAGCGCGGCTCAAAGAAATCCGGCATTAACCAAGTTGGTTCTGTGATAGCTAGTCAAAATAACCGTTCTTCTCCAATTAGTCTTAGGAGAAGAGGTGTGCGTATGAAGAAGTGA 1368 0.4123 MDRKDYLRKCSNMKCQRVKVDESVPILQDEVMEVEHLLAEPRNDHVSVDGSLYPHTTLNGKDDLELEVLDGLLDDVEINDLGGTDFFPGSCGEYFLDFEFANIAETPGYDPCEGSFLQNSSSESHSSGLSGSSIIGGVSESTKIPISQSECKKNSHGAFRNHPGQPSNVDCMYNISLDLHHLHGLNNDHPLTGDILSYEKEDISVEKCKTSAPREKRFRKPTQRYIEEFSNSRSKEKVPTTATKNKNLGVSSCDELQIKIKALKKITGKKSSDGNSDVTLSELQVRRGRPKKEKLEYDNGPSPSESGDEYFTPKSSRGKDRRQHQRMWTLSEVVNLVDGISEYGVGRWTDIKRCLFSSSSYRTPIDLRDKWRNLLRSSSAQKCSKKEAEENDDIALRPLPSNVARRVRELAKIHPYPRQRGSKKSGINQVGSVIASQNNRSSPISLRRRGVRMKK* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2652 455 Gene3D - 314 426 - -
Lja5g2652 455 ProSiteProfiles Myb-like domain profile. 320 375 IPR001005 -
Lja5g2652 455 CDD SANT_TRF 326 376 - -
Lja5g2652 455 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 328 379 IPR017930 -
Lja5g2652 455 MobiDBLite consensus disorder prediction 226 247 - -
Lja5g2652 455 SUPERFAMILY Homeodomain-like 322 413 IPR009057 -
Lja5g2652 455 MobiDBLite consensus disorder prediction 284 299 - -
Lja5g2652 455 MobiDBLite consensus disorder prediction 268 324 - -
Lja5g2652 455 Pfam Myb-like DNA-binding domain 328 375 IPR001005 -
Lja5g2652 455 SMART sant 324 377 IPR001005 -
Lja5g2652 455 MobiDBLite consensus disorder prediction 422 445 - -
Lja5g2652 455 MobiDBLite consensus disorder prediction 413 455 - -
Lja5g2652 455 PANTHER TRF-LIKE 8 8 449 - -
Lja5g2652 455 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 8 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2652 Lja-Chr5 52981109 52989394 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2652 326 375 Single Myb Histone (SMH) Gene Family AT1G15720 46.000 3.85e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2652 - - lja:Lj5g3v0659660.2 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2652 5 52981109 52989394 Lja5g2652 5 52981109 52989394 ECH