Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2651 ATGAAAAGGAAGTTCCTGAGCGGTGATGGTTCTTTCAGTAATGATAGCAGAGATATTGTGGAAATATTATACGACAAAGCTCAGTGCAAATTTGAGAATTTCCTTATTCATTTCTTAAGGGCGATTAATCCTCCGAATTTTAAGTTTCCTTTTCCTCCAATGATGGGTAATGGGAAGAAAGTAGATTTGTGCAAGTTGTTCTTGGTGGTGAAGGGAAAAGGCGGGTATGATGCTGTTTGCAATCAGAAGCTTTGGAATTTGGCTGGGGAGGAGTCTGGTTGTGGTGATAGTGTTGGTTCGACAGTGAAACTATTTTATTTAAAATACTTGAGTGCTTTAGATGCATGGATGGAGAAAAATGTTGACAGGAAGGAAGTCATTAACTTGGAGTGTAAAATGGATACATATGGTGTGTTTTTGATGGATTGCACTGCTCAGGCAGAAAAGTTGATATTTGACCGTGCTCCAAATGAGGTAGCTGGGGAGGAGCTCAAGCGTGAAGGCTATGATGATGAGTGCAAGAATTAG 528 0.4015 MKRKFLSGDGSFSNDSRDIVEILYDKAQCKFENFLIHFLRAINPPNFKFPFPPMMGNGKKVDLCKLFLVVKGKGGYDAVCNQKLWNLAGEESGCGDSVGSTVKLFYLKYLSALDAWMEKNVDRKEVINLECKMDTYGVFLMDCTAQAEKLIFDRAPNEVAGEELKREGYDDECKN* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2651 175 Pfam ARID/BRIGHT DNA binding domain 31 112 IPR001606 GO:0003677
Lja5g2651 175 SUPERFAMILY ARID-like 27 118 IPR036431 GO:0003677
Lja5g2651 175 SMART bright_3 26 119 IPR001606 GO:0003677
Lja5g2651 175 Gene3D - 12 131 IPR036431 GO:0003677
Lja5g2651 175 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 21 126 - -
Lja5g2651 175 Coils Coil 169 175 - -
Lja5g2651 175 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 21 126 - -
Lja5g2651 175 ProSiteProfiles ARID domain profile. 25 118 IPR001606 GO:0003677
Lja5g2651 175 SMART ARID_2 25 114 - -
Lja5g2651 175 CDD ARID 30 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2651 Lja-Chr5 52967097 52968884 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja5g2651 ARID 5.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2651 - - lja:Lj5g3v0659640.1 354.755