Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2650 ATGGAAACCAGGAAGAACCATGCTTCCAGAATCCCCATTGTTCTCTCCTTGCTCTATTTCACTCTGCTCCAGGGGATTCAATGCGCTGATAACGCTTTCGCCCCATCCTTTTACAGTGAAGAAATCTACAAGGAGCTTCAGAATATCGCTACCCTTTTGAACAAGGATATCAAAGCAAATTTAGGTTTCTGCATAAAGAATGTGAAAAATGATTGGGAGGAAGCGTTTGACTTTAAGGGGAAGTTGGATTTCATTGATTCTTGTGTTAAGAAAAAAGGAGATTTCAGAGATCGAATATGTACAGCAACTGAAATAAGGTACTACTTTCATGGTTTCGTGGAACAGGGAGGAGCATCTTCAGCCAATTACGCAAAACCAAACAAGAATTGCAATTTGACCTCATGGGTTTCTGGTTGTGAACCTGGTTGGTCTTGTAGTGCAGGCAAGAATATTGACTTGAAAAAGGACTTTAAGGAAATTCCTTATAGAACCAAAAATTGTCAACCTTGTTGCGAGGGTTTTTTCTGTCCTCAAGGACTAACTTGCATGATACCTTGTCCACTAGGTTCTTATTGTCCAATGGCAAAACTGAACCATACGACTGGAACATGTGACCCATATAGCTACCAGATACCTCAGGGAGAAACAAATCATACTTGTGGCAGTGCTGATATTTGGTCTGGCGTTGTGAACAATAGTGATATCTTCTGTTCTCCAGGATCATACTGCCCGACTACAACACGTAAAGTTTCTTGTGATAGTGGATATTACTGCAGGATGGGCTCTACTCACCAAAATCGATGCTCTAAGTTGAGTTCCTGCAATCCAAGCACAGCAACCCAAAATATGCATGCTTATGGCGCCTTACTTATTGTTGCATTGAGTACTCTCCTGATCATCATTTATAATTGTTCTGATCAAATTCTAGCCACTCGAGAAAGAAGGAAGGCTAAATCTAGGGAAGCTGCAGCAAGACAAGTAAGGGAAACTGTACAAGCTCGAGAAAGGTGGAAAGCAGCAAAAAATGTTGCTAAGAAGGGCAAGTCAGGATTGCAAGATCAATTATCCCGCACTTTTTCTCGCAGAAAGTCAGTAAGGGAAGCAGAGCAATCAAAGGTTTTCAATCAATCTAAACCTGCTACGGGCGATACATTTTTGCCACCAGTGCCTCCTGATTCTTCAAACAAATCTGAGCAGTCATCTGCAGCTACAAAAGCCCAAAAAAAGGAACCTAGCAATCTTACTAAAATGATGAATTCCCTTGAGAATGATCCTCAAGGCAATGAAGGATTCAATTTGCAAATCGGAGATAAAAATATTAAAAAGCAGATGCCGAAGGGAAAAAATTTACACACACAAAGCCAAATTTTAAGGTATGCTTATGGTCAGATTGAGAAGGAGAAAGCTCAACAAGAGAAAAACAAAAACTTGACTTTCTCAGGAGTGATTTCAATGGCTACTGATGGTGAGGTTACAACTAGGCCTGTGATTGAAGTAGCTTTCAAAGATTTAACTCTCACTTTGAAAGGGAAAAGAAAACATCTACTCAGATGTGTGACTGGTAAAATCATGCCTGGTCGAGTTTCAGCTGTGATGGGTCCCTCAGGAGCAGGCAAAACTACATTTCTTTCTGCTTTGGCAGGGAAAGCAAGAGGATGCCTTATGTCAGGCTCAATTCTAATCAATGGAAAACCTGAATCAATTCACTGTTATCAGAAAATTATTGGTTATGTGCCACAAGATGATATTGTGCATGGGAACTTGACAGTGGAGGAAAATCTTCGTTTCAGTGCAAGATGCAGACTGTCTGCGGACATGCCAAAACCGGATAAGGTTCTGATTGTTGAAAGAGTAATTGAGTCCTTGGGACTCCAGGCAGTAAGGGATTCCCTTGTTGGGACAGTAGAGAAGCGAGGTATATCTGGAGGCCAACGTAAACGTGTAAATGTTGGGTTGGAGATGGTTATGGAGCCTTCATTATTAATCTTAGATGAGCCTACAACTGGTCTGGACAGTGCATCTTCCACTTTACTTCTTAAAGCACTTCGTCGTGAAGCTCTCGAAGGGGTAAACATCTGCATGGTACTTCACCAACCAAGCTATACCTTGTTCAGAATGTTTGATGATATAATATTTCTAGCCAAAGGTGGGCTTACTGCATATCATGGTCCTGTTAAAAAAGTAGAAGAATACTTTGCTAGCATTGGAATCACTGTACCTGATCGTGTGAATCCTCCAGACCATTTCATTGACATTCTGGAAGGTTTAGTTAAACCGAGTTCTGGTGTGACTCATGAACAGCTTCCTGTCAGATGGATGCTTCATAATGGCTACCCAGTACCACCAGATATGCTTCATTATGCTGATCAAATTGCTGCTGCATCATCTTCCTCACATACAAATGATGCAATAAAGGGTCCTGATGAAGAACAATCCTTTGCTGGTGAGTTTTGGGAGGATATGAAGAGTAATGTCCAGAACCATAAAGATCATATAGAGGCAACCTTCTTAAAGACCAAGGATTTATCAAACCGAAGAACCCCTGGCGTAGCCCGGCAATACAGATACTACGTTGGGCGGATTTCCAAGCAGCAGTTGCGAGAAGGAAAATCACAAGCAGTTGACTATCTCCTTTTATTAGTTGCTGGTGCTATCTTAGGCACTCTTACCAAAGTAAATGATGAAACATTCGGGTCTCTTGGATACACATATACTGTCATTGCTGTCTCTCTACTATGCAAGATTGCAGCTCTGAGATCATTTTCTTTGGATAAATTGCAATACTGGAGGGAGAGTGCATCTGGGATCAGCAGTCTTGCTCATTTTTTGTCCAAAGATACAGTTGATCTGTTCAATACAATCATCAAACCCGTGGTGTATCTGTCCATGTTCTATTTTTTTAGCAATCCAAGGTCAAGCTTCGGAAGTAATTACATGGTTCTGGTCTGCCTTGTGTACTGTGTGACTGGCATTGCTTATGCAATAGCAATTTACTTTGAGCCTGCTCCAGCTCAGCTGTGGTCAGTGCTTCTCCCTGTTGTTATGACTCTCATTGCGAACCAGAAAAGAGATACCACCCTTATGAAGATCCTGGTAAAATTGTGCTACCCAAATTGGGCTTTGGAGGCCTTTATCACTGCAAATGCTGAAAGGTACACTGGAGTGTGGCTGATAACTCGTTGCAGTTCACTGATGAATAGCGGTTATAATGTCAGTGATTATCCTATATGTCTGGTTATCCTCATTTTTTATGGTATAGCTGCCCGAGTTGTGGCCTTCTTTTGCTTGATGATCACCCAAAAGAAGTGA 3309 0.4146 METRKNHASRIPIVLSLLYFTLLQGIQCADNAFAPSFYSEEIYKELQNIATLLNKDIKANLGFCIKNVKNDWEEAFDFKGKLDFIDSCVKKKGDFRDRICTATEIRYYFHGFVEQGGASSANYAKPNKNCNLTSWVSGCEPGWSCSAGKNIDLKKDFKEIPYRTKNCQPCCEGFFCPQGLTCMIPCPLGSYCPMAKLNHTTGTCDPYSYQIPQGETNHTCGSADIWSGVVNNSDIFCSPGSYCPTTTRKVSCDSGYYCRMGSTHQNRCSKLSSCNPSTATQNMHAYGALLIVALSTLLIIIYNCSDQILATRERRKAKSREAAARQVRETVQARERWKAAKNVAKKGKSGLQDQLSRTFSRRKSVREAEQSKVFNQSKPATGDTFLPPVPPDSSNKSEQSSAATKAQKKEPSNLTKMMNSLENDPQGNEGFNLQIGDKNIKKQMPKGKNLHTQSQILRYAYGQIEKEKAQQEKNKNLTFSGVISMATDGEVTTRPVIEVAFKDLTLTLKGKRKHLLRCVTGKIMPGRVSAVMGPSGAGKTTFLSALAGKARGCLMSGSILINGKPESIHCYQKIIGYVPQDDIVHGNLTVEENLRFSARCRLSADMPKPDKVLIVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTTGLDSASSTLLLKALRREALEGVNICMVLHQPSYTLFRMFDDIIFLAKGGLTAYHGPVKKVEEYFASIGITVPDRVNPPDHFIDILEGLVKPSSGVTHEQLPVRWMLHNGYPVPPDMLHYADQIAAASSSSHTNDAIKGPDEEQSFAGEFWEDMKSNVQNHKDHIEATFLKTKDLSNRRTPGVARQYRYYVGRISKQQLREGKSQAVDYLLLLVAGAILGTLTKVNDETFGSLGYTYTVIAVSLLCKIAALRSFSLDKLQYWRESASGISSLAHFLSKDTVDLFNTIIKPVVYLSMFYFFSNPRSSFGSNYMVLVCLVYCVTGIAYAIAIYFEPAPAQLWSVLLPVVMTLIANQKRDTTLMKILVKLCYPNWALEAFITANAERYTGVWLITRCSSLMNSGYNVSDYPICLVILIFYGIAARVVAFFCLMITQKK* 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2650 1102 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 499 740 IPR003439 GO:0005524
Lja5g2650 1102 MobiDBLite consensus disorder prediction 370 413 - -
Lja5g2650 1102 CDD ABCG_EPDR 497 723 - -
Lja5g2650 1102 Pfam ABC transporter 519 667 IPR003439 GO:0005524
Lja5g2650 1102 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 32 1098 - -
Lja5g2650 1102 SMART AAA_5 525 717 IPR003593 -
Lja5g2650 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 722 IPR027417 -
Lja5g2650 1102 Pfam ABC-2 type transporter 697 1102 IPR043926 GO:0140359
Lja5g2650 1102 MobiDBLite consensus disorder prediction 338 413 - -
Lja5g2650 1102 Gene3D - 489 737 IPR027417 -
Lja5g2650 1102 PANTHER WHITE-BROWN COMPLEX HOMOLOG PROTEIN 30-RELATED 32 1098 - -
Lja5g2650 1102 ProSitePatterns ABC transporters family signature. 640 654 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2650 Lja-Chr5 52947904 52965945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2650 526 719 Calmodulin-binding Proteins AT2G36910 28.713 1.76e-09 60.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2650 5 52947904 52965945 Lja5g0903 5 8729316 8740217 ECH
Lja5g2650 5 52947904 52965945 Lja1g0840 1 8207807 8215519 ECH
Lja5g2650 5 52947904 52965945 Lja5g2650 5 52947904 52965945 ECH