Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2649 ATGAAAATGAAGTGGTTTCTTCCATTCTACTATGGAGAGAAGAAGGAAGATCCTAAGAGCTTGCAATTGCCTTCATTATCGGGTCTGTCCAACATTTCTACTTATGATGAGGGTGAGGTGAAAAGAACTGGTTCTGAGTCAAGTTCCCTGGATGCCTCGAGCCATAGCACAGATTCTCTCAGGAGGAATGCATTTCCCAGTTTGTCTGAAAGACCCAGCAACCTGAGAGTATTTACAGTAGCTGAACTGAAATCAGCCACAAAGAATTTTGGTCGCTCTGTTATGCTTGGGGAGGGTGGGTTCGGGTGTGTCTACAAGGGAATGATCAAGAGTGTAGATGATCCTCCCAGAAGAACTGAAGTTGCAGTTAAACAACTTGGCAGAAGAGGAATTCAGGGACACAAGGAATGGGTAACTGAAGTGAATGTTCTGGGTATTGTTGAGCATCCCAATCTTGTAAAACTAGTTGGCTACTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATATATGCCCAATAGAAGTGTCGAACACCATCTCTCCCCACGGTCAGAAACTCCTCTCCCATGGAGTAGGAGATTGAAAATAGCCCAAGATGCAGCTCGTGGCTTAACATATCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCTTCAAATATTCTGCTGGACGAGCACTGGAATGCAAAGTTGTCGGACTTCGGGTTAGCAAGATTGGGACCAGCTGAAGGGTTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGCTATGCAGCTCCTGAATATATTCAAACTGGGCGTCTCACCTCGAAGAGTGATGTATGGAGCTATGGTGTTTTCCTTTATGAACTCATTACTGGCAGGCGCCCTCTGGATCGAAATCGCCCCAAGGGTGAGCAGAAGCTGTTGGATTGGATAAGGCCATACCTTTCAGATGGGAAGAAATTTCAAATAATATTGGATCCAAGACTTGAGAGGAAACACATCTTCAAGTCAGCCCAAAGACTCGCGGTGATAGCTAATCGGTGCTTGGTCAGAAACCCGAAGAATCGCCCTAAGATGAGTGAAGTATTAGAAATGATGGATCAGGTTGTGAAGTCTTCAGTGAGTGCTAATCAACAGCCACCATTGAGGAGTGTTGCCTCAGCAGAAGCTTCTCCGGACACTGACATTAAGAACAAGAAAAGGACCATAGATTCAAAACCAGATTGTAATTGGTTTAGGATTTGGAGACCAAAGCTTTTGAGAACATTTTGA 1287 0.4406 MKMKWFLPFYYGEKKEDPKSLQLPSLSGLSNISTYDEGEVKRTGSESSSLDASSHSTDSLRRNAFPSLSERPSNLRVFTVAELKSATKNFGRSVMLGEGGFGCVYKGMIKSVDDPPRRTEVAVKQLGRRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSPRSETPLPWSRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEHWNAKLSDFGLARLGPAEGLTHVSTAVVGTMGYAAPEYIQTGRLTSKSDVWSYGVFLYELITGRRPLDRNRPKGEQKLLDWIRPYLSDGKKFQIILDPRLERKHIFKSAQRLAVIANRCLVRNPKNRPKMSEVLEMMDQVVKSSVSANQQPPLRSVASAEASPDTDIKNKKRTIDSKPDCNWFRIWRPKLLRTF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2649 428 ProSiteProfiles Protein kinase domain profile. 90 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2649 428 MobiDBLite consensus disorder prediction 379 407 - -
Lja5g2649 428 Pfam Protein kinase domain 94 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2649 428 ProSitePatterns Protein kinases ATP-binding region signature. 96 124 IPR017441 GO:0005524
Lja5g2649 428 MobiDBLite consensus disorder prediction 16 66 - -
Lja5g2649 428 Gene3D Transferase(Phosphotransferase) domain 1 176 393 - -
Lja5g2649 428 Gene3D Phosphorylase Kinase; domain 1 64 175 - -
Lja5g2649 428 CDD STKc_IRAK 96 373 - -
Lja5g2649 428 MobiDBLite consensus disorder prediction 23 38 - -
Lja5g2649 428 PANTHER OS01G0588500 PROTEIN-RELATED 9 417 - -
Lja5g2649 428 PANTHER KINASE 1B 9 417 - -
Lja5g2649 428 MobiDBLite consensus disorder prediction 45 66 - -
Lja5g2649 428 SUPERFAMILY Protein kinase-like (PK-like) 66 371 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2649 Lja-Chr5 52934044 52939958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2649 3 371 Glycoside Hydrolase AT3G07070 43.583 8.14e-93 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja5g2649 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2649 - - gmx:100305438 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0839 1 8201736 8205307 Lja5g2649 5 52934044 52939958 PCT