Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2647 ATGACTTCAGACTTAGTTATTCACCCTTTTCCTCACCCCACCACCACCACCGTCGCCACCGCCGGCACCACCACCATCACCACCGGAACCGCCTCCAATTCCAAGGCGAAACTCGCTGTCACCAGAAAACCTGCCACCACCACCCGCTCCACCAAGGACCGCCACACCAAGGTTAACGGCCGCGGTCGCCGCGTCCGCATGCCGCCGCTCTGCGCCGCCCGGATATTCCAGCTTACCCGAGAACTCGGCCACCGCTCCGATGGCGAGACAATCGAGTGGCTCCTCCGTCATGCTGAGCCTTCCATCATCGCCGTTACCGGCACCGGAACTGTCCCTGCTGCTCCCATCTCCACCGTCGCTCCCTCTTCCTCCACTCCCGCGCCATCGGTCTCTTGCCCCGTTCAGGCAGTCTCCGAGGTGAGCGCCGCCGGCATGGGCATGGGCATGTTCAGCGTGCAGCCGAGTTGCCGGCTCGACCTGTGCCAGCCGGCGGGGATGGATTACCCGGCGGTGAGTGGTTACCGGAACATGCCGTTCACGGCGTTGCTGCTGCAGCCGGCGACGGCGGCGGAGGAGAATCAGCAAGAGCAGGCTCTCAGCAAACAGTAA 609 0.642 MTSDLVIHPFPHPTTTTVATAGTTTITTGTASNSKAKLAVTRKPATTTRSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAVTGTGTVPAAPISTVAPSSSTPAPSVSCPVQAVSEVSAAGMGMGMFSVQPSCRLDLCQPAGMDYPAVSGYRNMPFTALLLQPATAAEENQQEQALSKQ* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2647 202 PANTHER TRANSCRIPTION FACTOR TCP16-RELATED 35 135 - -
Lja5g2647 202 MobiDBLite consensus disorder prediction 40 61 - -
Lja5g2647 202 ProSiteProfiles TCP domain profile. 51 105 IPR017887 -
Lja5g2647 202 Pfam TCP family transcription factor 50 139 IPR017887 -
Lja5g2647 202 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 35 135 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2647 Lja-Chr5 52912052 52912956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2647 51 188 TCP Transcription Factor Family AT2G37000 57.971 5.55e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja5g2647 TCP 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2647 - - cam:101510590 241.121