Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2610 ATGACATACAAATATCAAATAGCCATGCAAGGAGAACATTTGCGTAAAGGGACTTGGCTCCAAGAGGAAGATGAGCAATTGATCAGCTTTGTGACCCGTCTTGGGGAACGTAGGTGGGATTCCCTGGCCAAAGTAGCTGGCCTTAGGAGAAGTGGTAAAAGCTGCAGGTTAAGGTGGATGAACTATCTTCGTCCAAATCTCAAGCATGGCCCTTTTAGTGTTGAAGAAGAACAACTAATTGTCCACCTTCAGCAGCGATGGGGTAACAAGTGGTCGAAAATTGCTCGAAGGCTTCCAGGACGAACAGACAATGAAATAAAGAACTACTGGAGAACCCATTTAAGAAAAAGAGCAGAAGTTCAACAAGAAGGTGAGTTGAAGTATGAATTAGAAAACACAGCACAAGATTTCAACCAGAAAAGCATCACTAATATGATTTCCGAGGATTGCAACCATGTTAAAGTTTACAGTGAAGACAGTGAGTGGGAATCTAAGGAAAGATCCATTGACACTTTTCCCTTATCAGATTGGGAATTGAGAAGCTCACCGTATGAAGCTAGGATATTTGATTGGATAACAGAATTGCAAAATGGATTTGGAGAGAAAGAACGAGAACATGATTGCGATAACTCTCAAGAGTTTGCAGAGAGCTGTTATAATATATGGGATTATTCAGGTTACTTGTGGGACATGAATTAA 699 0.4077 MTYKYQIAMQGEHLRKGTWLQEEDEQLISFVTRLGERRWDSLAKVAGLRRSGKSCRLRWMNYLRPNLKHGPFSVEEEQLIVHLQQRWGNKWSKIARRLPGRTDNEIKNYWRTHLRKRAEVQQEGELKYELENTAQDFNQKSITNMISEDCNHVKVYSEDSEWESKERSIDTFPLSDWELRSSPYEARIFDWITELQNGFGEKEREHDCDNSQEFAESCYNIWDYSGYLWDMN* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2610 232 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Lja5g2610 232 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lja5g2610 232 Gene3D - 7 69 - -
Lja5g2610 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lja5g2610 232 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lja5g2610 232 CDD SANT 71 114 IPR001005 -
Lja5g2610 232 Gene3D - 71 143 - -
Lja5g2610 232 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lja5g2610 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lja5g2610 232 CDD SANT 18 63 IPR001005 -
Lja5g2610 232 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 232 - -
Lja5g2610 232 SMART sant 68 116 IPR001005 -
Lja5g2610 232 SMART sant 15 65 IPR001005 -
Lja5g2610 232 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lja5g2610 232 PANTHER MYB TRANSCRIPTION FACTOR 8 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2610 Lja-Chr5 51745118 51746163 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2610 12 119 MYB Transcription Factor Family AT5G59780 62.963 1.77e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja5g2610 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2610 K09422 - gmx:100783472 337.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2610 5 51745118 51746163 Lja5g2610 5 51745118 51746163 ECH