Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2609 ATGCTTCAAACAACCTGCATTTTACTCATCTCTGCAGTTGTGGGTTCGTTTTTTCCACATGGAAGAGCAATGCTGAACCTCACTCTGCCTGGTCAACATCCTGACCCTGAAGCTGTTGCCCGAGAAGTTCACTGGAAAGTGAATGCCTCACTTGCAAGGAGGGAAATGCTAGCAGTATCCGAGAAAGATGTCTCAACATCATGCCTCACAGGGAATCCCATTGATGATTGCTGGAAATGCGACCCAGATTGGGCCAACAACAGGCAGAGGCTAGCCGACTGCGCCATCGGGTTCGGGACAGGCGCGAAGGGTGGGAAAGGTGGTCAATTTTACATCGTCACGGACTCCTCAGACCATGATCCGGTGAACCCGAAACCTGGCACGCTCCGTTACGCCGTGATTCAGAACGAGCCACTGTGGATTGTGTTCCCTAGTAACATGATGATTAAGCTTTCACAGGAGCTTATATTTAACAGCTATAAGACTATTGATGGGCGTGGAGCGGATGTGCACATTGTTGGGGGAGGCTGCATTACTTTGCAGTACATAAGTAATGTTATCATTCACAACATTCATGTCCACCACTGTCATCCCTCTGGTAATACTAACGTGCGGTCGAGTCCAGAGCACTACGGCTACCGCACACTATCAGACGGCGACGGAATCTCCATCTTCGGATCACGCGACATATGGATCGACCACTGCACCCTCTCACGGTGCAAAGACGGTCTAATCGACGCCGTGATGGGTTCAACCGCTATAACAATCTCCAACAACCACTTCTCCCACCACAACGAGGTCATGCTCCTCGGCCACAGCGACCACTACACTCCCGACTCCGCCATGCAGGTCACAATCGCCTTCAACCACTTCGGCGAACAGCTCGTGCAACGCATGCCGCGGTGCAGGCTGGGTTACATCCATGTGGTGAACAATGATTTCACTCGGTGGGAGATGTACGCGATCGGCGGCAGCGGCGGACCGACGATTAATAGTCAGGGGAATCGGTATACGGCGCCGGAGGATGGCCGGGCGAAGGAGGTGACGAAGCGGTTGGATTCTGGTGACGGCGAGTGGAGCTCGTGGAATTGGCGGTCGGAGGGGGATGTGTTGGTGAATGGAGCGTTTTTTGTGGCGTCTGGGGCGGATGGGGAGGGGAAGTATGAGAAGGCTTTTAGTGTGGACCCTAAATCGGCGGATCGGATTTCGATGCTCACCATGGCCGCCGGTGTTCTTGGTGTTGCTAGGGACAATAATCTGGGCATGTGGACCAGAGGACCCAATGATGGTGGTACTTATTTTTCAGATTTCGGCCCAGATTACACGGATGATATGTCCCAGAGTATAATGCGGTTGCCACCTTCACATACTTTGTCTCTTGTATGTGTTTTTGTTACATTGTTGTGCTTGTTTTCTCATGCAACACCCTTAATAGTAGTTCTATAA 1446 0.518 MLQTTCILLISAVVGSFFPHGRAMLNLTLPGQHPDPEAVAREVHWKVNASLARREMLAVSEKDVSTSCLTGNPIDDCWKCDPDWANNRQRLADCAIGFGTGAKGGKGGQFYIVTDSSDHDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNEVMLLGHSDHYTPDSAMQVTIAFNHFGEQLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSGGPTINSQGNRYTAPEDGRAKEVTKRLDSGDGEWSSWNWRSEGDVLVNGAFFVASGADGEGKYEKAFSVDPKSADRISMLTMAAGVLGVARDNNLGMWTRGPNDGGTYFSDFGPDYTDDMSQSIMRLPPSHTLSLVCVFVTLLCLFSHATPLIVVL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2609 481 Gene3D - 71 413 IPR012334 -
Lja5g2609 481 SMART amb_all 146 343 IPR002022 -
Lja5g2609 481 PANTHER PECTATE LYASE 1 436 - -
Lja5g2609 481 SUPERFAMILY Pectin lyase-like 72 399 IPR011050 -
Lja5g2609 481 PANTHER PECTATE LYASE 18-RELATED 1 436 IPR045032 GO:0030570
Lja5g2609 481 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Lja5g2609 481 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Lja5g2609 481 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Lja5g2609 481 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Lja5g2609 481 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Lja5g2609 481 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Lja5g2609 481 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Lja5g2609 481 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Lja5g2609 481 Pfam Pectate lyase 155 323 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2609 Lja-Chr5 51538036 51542583 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2609 1 480 Polysaccharide Lyase AT3G53190 69.753 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2609 K01728 - gmx:100815062 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2609 5 51538036 51542583 Lja5g2609 5 51538036 51542583 ECH