LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja5g2600	ATGGATAACACTAGCAGTGATTCTTTTGTTAATTTGGATGATGAGGGAGATGTTGAGTTCGAGTATGATATTAGCTCTGGTGATAGTGGTAGCGGAGAGCATAATGATTTGGGTGATAAGGATGAGGCTGAGGACGTAGATGCAAAAGATGATCACTATAAAAGAATATTAGACCTGTCGGCGGATGATATACGACATCTTGACTTTGGTAGTGAAGAGGAAGCATATCAATTCTATCAAGCATATGCAAAATATCAAGGTTTTATTGTGAGGAAAGATGATATTGGTCGAGATTATCATGGGAATGTTAACATGCGTCAATTTGTCTGCAATAGGCAGGGGTTGAGGAGTAAAAAGCACTATAACAGGACAGATAGAAAAAGAGATCATAAACCAGTTACTCATACAAATTGCCTAGCTAAGCTCCGTGTACACTTAGATTACAAGATAGGGAAATGGAAAGTGGTCTCCTTTGAAGAGTGTCATAACCATGAATTAACCCCTGCAAGATTTGTGCATTTCATCCCTCCTTACCGTGTAATGAATGATGCAGATAAAGCTAAAGGGGATATGTTACATTCACATGGTGGTAGAACGGGCTACATAATAGGAGACATGGTGCAGAAAGGAGGATATGGTGGTCTTGGTTTTTCTAAAAAGGATTTAGACAACTATATTGACCAACATAAGCGTGTTGAGATTAAAGATATGGATGCAACTGTTGCCTTGAGCTATCTACAAGGTAAGGCAGACAATGACAACATGTTATTTTCAAAGTACACAAGTAGAACTGATGGAAAACTTGAGCATCTATTTTGGGCAGATGGACAAAGCAGAGTTGATTATCAGTGTTTTTGTGATGTACTTGCTATTGATGCCACATACAAGAACAAGTATAACAGGCTGTTGGTAATTTTCTCTGGTTGTAATCATCATTCACAAGCCGTTATCTTTGGTTGTGCTTTGTTGTTGGATGAAGCAACTGAGATATATAAATGGGTGTTAGAATCATTTTTGGAAGCAATGTGCTTTAAACACCCTAAAGTGGTAGAGACAGTTGGCGACGGTGCTATAAGTGAGGCTATCAAACATGTGTTTCCAAATGCATCACACAGACTTTGTGCATGGAACTTGCTCAAAAGTGCTTGTGATATTGTCAAGAATGATCCCTTTCTAGAAGACTTCAAGAGGGCAATGTATTCCATTTATACAATTGACGGGTTTGAAGACTATTGGAAGAATATGGTTGAGAAACACGGTCTTATCGGAAATGAATGGGTTTCTAAAACATATGAGAATAGGTCAATGTGGGCGCATGCATATCTGCGGGATGAATTATTTGGTCTTGTTAGAACTACTTCTCAGTGTGAAGCAATTAATTCATTGATAAACATTTGTGTTAGGCAAAAAGGTAGTCTTTGTGACTTCATTCGTAACTTTGACCAAATTGTGAGAGAGTACAGAAACAATGAACTCACATTCGATTACAAATCTCTGTTTTCTGAACATGTGATGACTACTACTCTTTTGAAGATCGAGCGTGAGGCTTCACAAAGTTTCACGTTTGAGATTTTCAGTGAAGTAAAAAATGAGATAGAAAAGTGTGGTGCTTTAAATGTGATTGTTCGGATGGAAGATGGAGATAAGTTAAGGTTCAAGATGAACAAATATGGTGAACCGGGGAGAGAAATCAATGTTTTTTATGATAGGGAGAACTCTGCCTTTTTATGTGATTGTCGTCTATTTCAATCTCGGGGTATTCCATGTTGTCTTATCTTTTGTGCCATGAGAAATGAACATGTTGAGTCCATTCCTAGCAGTTTGATTTGCAAACGCTGGACAATGACAGCTAAGAGTGACTTTATTTCCTCTGCTTTATCCGAGGAAGTAGATTCTGATATCGCGGAGGAGGCACGTTATGTTGCATTACAAGCTGCTTCTAATAATGTTTGCCGCATTGCATCAAAAAGCATTTACCATTTCAATGAGGTCAGAAATGAAATTCTTAGGCTGGCTAATAAGTTTGAAAAGCAAGGGACTCCATGTGGCACACCGAGTTCATCTGTAAATGATGTATGTGGTCCAACACTGGCTAAGACAAAAGATACTCCAAGTAAGAAAAAGTATGGGTTGAAAAAGAGATGTTCATATTGTAATAGCAGTGGACACACTATCAGAACATGTCCTACACTCCTTGGCATGCATGTCCAACATACTATGAATACTGCACCATCACCTTCAAATACTGATGGTGGCAGAAGAGAAGTAGATCCTGACAAAGCAGACACTCCACTTGATGAATATAATGTCCAAGACAGTCAGAAGGTGGATGTAAGAGCAAAGGGTTCTGGTAAAATGAAAGAAAAGGAAGTAAATGGCTTGAAACATGATTCAGTCAAGGACTCGCCCATTACTTCTTCAAGTAAAGGTAATCCTGTGATTCCCCAGTTAGTGCCTATATTACCCCGGCAACAGAACTTAAATTTTGGTTATGGCACATCAAGCCACGGGATGCCTATGTTTCCTCCGTATGGGGTATTTCCTGTATACCCCAATTTTGCCCAATTTCCATTTCGACCTCAAATTCCTCAGTACGTAAGTGGAATGCAGAATGTTCGTGGAACTAGTTCATTTGATGATTTGTCTCAACAAGTTTCTAAAAGTGGAGCTGGAACAGGTGGCAAGCCTAACCAGCCTAAGTGA	2703	0.3903	MDNTSSDSFVNLDDEGDVEFEYDISSGDSGSGEHNDLGDKDEAEDVDAKDDHYKRILDLSADDIRHLDFGSEEEAYQFYQAYAKYQGFIVRKDDIGRDYHGNVNMRQFVCNRQGLRSKKHYNRTDRKRDHKPVTHTNCLAKLRVHLDYKIGKWKVVSFEECHNHELTPARFVHFIPPYRVMNDADKAKGDMLHSHGGRTGYIIGDMVQKGGYGGLGFSKKDLDNYIDQHKRVEIKDMDATVALSYLQGKADNDNMLFSKYTSRTDGKLEHLFWADGQSRVDYQCFCDVLAIDATYKNKYNRLLVIFSGCNHHSQAVIFGCALLLDEATEIYKWVLESFLEAMCFKHPKVVETVGDGAISEAIKHVFPNASHRLCAWNLLKSACDIVKNDPFLEDFKRAMYSIYTIDGFEDYWKNMVEKHGLIGNEWVSKTYENRSMWAHAYLRDELFGLVRTTSQCEAINSLINICVRQKGSLCDFIRNFDQIVREYRNNELTFDYKSLFSEHVMTTTLLKIEREASQSFTFEIFSEVKNEIEKCGALNVIVRMEDGDKLRFKMNKYGEPGREINVFYDRENSAFLCDCRLFQSRGIPCCLIFCAMRNEHVESIPSSLICKRWTMTAKSDFISSALSEEVDSDIAEEARYVALQAASNNVCRIASKSIYHFNEVRNEILRLANKFEKQGTPCGTPSSSVNDVCGPTLAKTKDTPSKKKYGLKKRCSYCNSSGHTIRTCPTLLGMHVQHTMNTAPSPSNTDGGRREVDPDKADTPLDEYNVQDSQKVDVRAKGSGKMKEKEVNGLKHDSVKDSPITSSSKGNPVIPQLVPILPRQQNLNFGYGTSSHGMPMFPPYGVFPVYPNFAQFPFRPQIPQYVSGMQNVRGTSSFDDLSQQVSKSGAGTGGKPNQPK*	901

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja5g2600	900	MobiDBLite	consensus disorder prediction	21	45	-	-
	Lja5g2600	900	MobiDBLite	consensus disorder prediction	779	797	-	-
	Lja5g2600	900	Pfam	FAR1 DNA-binding domain	77	167	IPR004330	-
	Lja5g2600	900	PANTHER	OS02G0262500 PROTEIN	64	667	-	-
	Lja5g2600	900	MobiDBLite	consensus disorder prediction	779	811	-	-
	Lja5g2600	900	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	64	667	IPR031052	GO:0006355
	Lja5g2600	900	Pfam	MULE transposase domain	288	380	IPR018289	-
	Lja5g2600	900	MobiDBLite	consensus disorder prediction	739	766	-	-
	Lja5g2600	900	MobiDBLite	consensus disorder prediction	876	900	-	-
	Lja5g2600	900	MobiDBLite	consensus disorder prediction	752	766	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja5g2600	Lja-Chr5	51324742	51336552	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Lja5g2600		MULE	4.8e-19	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja5g2600	-		-	ccaj:109792835	838.95