Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2567 ATGGATTCAGAGCAGGACACAATGTTGGTGCCTCCATGGCTCAAACCATTGCTTAAAACACCTTTCTTCAATGTCTGTCGCATTCATGGAGACGCGGCGAGGAGCGAATGCAACATGTTTTGCTTGGACTGCAATGGTGATGCCTTTTGCTTTTACTGCCGTTCCTCAAGGCACAAGGATCACCATGTCATTCAGATAAGGAGATCTTCTTATCACAATGTGGTGAGGGTGGGGGAAATTGACAAGGTGTTGGACATTAGTGGAGTGCAGACTTATGTGATCAACAGTGCTAGAGTTCTGTTTCTCAATGAGAGGCCTCAACCAAAGTCTGGGAAAGGAGTATCTCACATCTGTGAGATTTGTGGTAGAACCCTCTTGGATCCATTTCGTTTCTGTTCTTTGGGATGCAAGCTTGTGGGAATAAAAAGAAATGGGGATGCAAGCTTTAACAAGGAGGCATTGGCAATGGATGGGATGTCAAGGAGATCAGTCTCTTCAAGACAGCATGAAGAAGAATTGCGTGAAGGATCACAAGAAGACATGTACCCTGACACGCCTCCTCCACCTGCTTCAAATGCAAGGAGAAGGAAAGGGATTCCTCATAGAGCTCCTTTTGGCTCATAA 624 0.4567 MDSEQDTMLVPPWLKPLLKTPFFNVCRIHGDAARSECNMFCLDCNGDAFCFYCRSSRHKDHHVIQIRRSSYHNVVRVGEIDKVLDISGVQTYVINSARVLFLNERPQPKSGKGVSHICEICGRTLLDPFRFCSLGCKLVGIKRNGDASFNKEALAMDGMSRRSVSSRQHEEELREGSQEDMYPDTPPPPASNARRRKGIPHRAPFGS* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2567 207 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 206 - -
Lja5g2567 207 Pfam PLATZ transcription factor 67 138 IPR006734 -
Lja5g2567 207 SUPERFAMILY B-box zinc-binding domain 23 68 - -
Lja5g2567 207 MobiDBLite consensus disorder prediction 163 179 - -
Lja5g2567 207 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 3 206 - -
Lja5g2567 207 MobiDBLite consensus disorder prediction 157 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2567 Lja-Chr5 50660272 50662167 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Lja5g2567 PLATZ 7.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2567 - - gmx:100809455 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0780 1 7553900 7555707 Lja5g2567 5 50660272 50662167 PCT