Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2565 ATGGCCGAATCTTCCGCCACCGCCACCCCCACCGTCGCCGCCGACACCCCCACCGTCGCAACCGACTCCCCCACCGTCGCCACCGCCACCGCTGCTCCGCCTGCACACAAAAGCTGGGCTGACGAAGCCGACGAAGAAGCCAGTGCCTCGTCGACCGCAACCTCATCCATCAACCTCGACGGATTAGCGATCGACGAGACCAAGAAGTCACCCAAGCTGTTAGACGATCCCGACGACTCCAATATACAAGCGGTTTCCTCCGGCGACACTCCGTATACCTCGGCGGCGACGTTTGAAGACTTGAGTCTCTCGCCGGAGCTGGTGAAGGGACTTTACGTGGAGATGAAGTTCCAGAAGCCTAGCAAAATCCAAGGCATAAGCTTGCCCATGATCCTGAGCCCTCCACATAGAGACTTGATCGCACAGGCTCATAATGGTTCCGGCAAGACCACTTGTTTTGTGCTTGGGATGCTTAGTCGTGTTGATCCCAAGTTGCAGGCTCCCCAAGCCCTCTGCATTTGCCCCACCAGGGAGTTAGCTATTCAGAATATTGAGGTTTTGCGAAAGATGGGGAAGTATACTGGGATTAGTTCAGAATGTGCTGTGCCCATGGACAGCAGGGATGTGATTCCGATCAACAAACGTCCGCCAGTTATGGCTCACGTGGTCATTGGGACTCCTGGCACCATTAAGAAGTGGATAAGTTTTAAGAAACTCGGGGTGGCGAGGTTAAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTCAAGATGATTCTTTGAGGATAATGAAAGAAATTGAAAAATTGAATTCTGGCTGTCAGGTTCTTTTGTTTTCTGCTACTTTCAATGATAAAGTCAAGAACTTTGTTTCAAAGGTAGTTAAGAAGGATCACAATCAACTTTTTGTGAGGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTGCGTTGTCTTGATGAACTCTCTAAGATTGAAGTGATACGGGATTACATATTTGAAAATGGAGAGAACATGGGGCAAACTATTATATTTGTACGCACAAGAAATAGCGCAAAGATGTTGCATAAAGCACTTGTTGATTTGGGCTACGAGGTTACTGCCATACAAGGTGCTCTTAATAATGAAGATAGAGACAAGATTGTCAAGGAGTTCAGAGATGGGTTAACTCAGGTTCTGATATCAACCGATGTTCTTGCCCGCGGCTTTGATCAACAACAGATTAATTTGGTTATCAACTATGATCTTCCGGTGAAACACACTGCTGAGTATACCCGTGAACCCGAGCCTGATTATGAGGTGTATTTGCACAGGGTTGGTAGGGCTGGGCGTTTTGGGCGTAAGGGGGCTGTATTTAACCTGATATCTGATGAAAGGGATGCGAACATCATGTCAAAGATTGAAAACCATTTCGGCACCCATGTAACTGAGGTGCGAGAAAAGAGCACTGAAGACTTTAAAGCATGTCTCAAGGAAGCTGGTTTGATATGA 1515 0.4706 MAESSATATPTVAADTPTVATDSPTVATATAAPPAHKSWADEADEEASASSTATSSINLDGLAIDETKKSPKLLDDPDDSNIQAVSSGDTPYTSAATFEDLSLSPELVKGLYVEMKFQKPSKIQGISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNIEVLRKMGKYTGISSECAVPMDSRDVIPINKRPPVMAHVVIGTPGTIKKWISFKKLGVARLKILVFDEADQMLAEDGFQDDSLRIMKEIEKLNSGCQVLLFSATFNDKVKNFVSKVVKKDHNQLFVRKEELSLDAVKQYKVRCLDELSKIEVIRDYIFENGENMGQTIIFVRTRNSAKMLHKALVDLGYEVTAIQGALNNEDRDKIVKEFRDGLTQVLISTDVLARGFDQQQINLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLISDERDANIMSKIENHFGTHVTEVREKSTEDFKACLKEAGLI* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2565 504 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 75 484 - -
Lja5g2565 504 MobiDBLite consensus disorder prediction 1 89 - -
Lja5g2565 504 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 306 IPR014001 -
Lja5g2565 504 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 335 495 IPR001650 -
Lja5g2565 504 Gene3D - 75 312 IPR027417 -
Lja5g2565 504 PANTHER DEAD-BOX HELICASE DBP80 75 484 - -
Lja5g2565 504 MobiDBLite consensus disorder prediction 1 28 - -
Lja5g2565 504 Pfam DEAD/DEAH box helicase 122 294 IPR011545 GO:0003676|GO:0005524
Lja5g2565 504 SMART helicmild6 361 454 IPR001650 -
Lja5g2565 504 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 96 125 IPR014014 GO:0003724
Lja5g2565 504 SMART ultradead3 116 322 IPR014001 -
Lja5g2565 504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 467 IPR027417 -
Lja5g2565 504 MobiDBLite consensus disorder prediction 45 61 - -
Lja5g2565 504 Pfam Helicase conserved C-terminal domain 332 454 IPR001650 -
Lja5g2565 504 Gene3D - 313 501 IPR027417 -
Lja5g2565 504 CDD SF2_C_DEAD 319 463 - -
Lja5g2565 504 CDD DEADc_DDX19_DDX25 103 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2565 Lja-Chr5 50643974 50650027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2565 61 486 Eukaryotic Initiation Factors Gene Family AT1G72730 35.862 2.07e-69 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2565 K18655 - gmx:100784739 710.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2565 5 50643974 50650027 Lja5g2565 5 50643974 50650027 ECH