Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2554 ATGGGGGACAACAACCTCAACCACCACGAAGCCGCCGACAGCAGCGATTTCACCTCCGAGGACGAAGGAACCGAGGATTACCGACGCGGCGGCTACCACCCTGTCCTCATCGGCGACGCCTTCAAAGCTGGCCGCTATGTTGTTCAGAGCAAGCTCGGTTGGGGCCATTTCTCCACCGTCTGGCTCGCTTGGGACACCCATCATTCTAGGTATGTGGCTTTGAAAGTTCAAAAGAGTGCTCAGCATTACACCGAGGCAGCGATGGATGAGATAACGATTTTGCAGCAGATTGCTGAGGGAGACCCGGATGATAAAAAGTGTGTGGTGAAGCTTTTGGACCATTTCAAGCATTCTGGTCCAAATGGACAGCATGTTTGCATGGTGTTTGAGTACCTTGGGGACAATCTCTTGACTCTTATTAAGTATTCGGATTATCGCGGGATGCCTATCAACATGGTTAAAGAGATATGCTTTCATATTCTGGTTGGATTGGATTACTTACATAAGCAGCTTTCTATCATACATACTGACTTGAAACCTGAAAACATCCTCCTCCTGTCGATGATAGATCCGTCTAAGGACCGTATAAAGTCCGGTGCTCCTCTTATTCTTCCGAATACTAAAGACAAGACGGTGCTGGAGTCAGCGGCTGCAAAAGACACAAAAACAGCAAATGGGGATTTGATTAAGAATCATAAGAAAAAGATTAAAAGAAAGGCTAAGCAAGCAGCTCATGGATGTGTTGAGAAGGAGGCTTCTGAAGGAGTTGAGGGTAATCCTGAAACCTCCGGTGCTGTAGCATCTTCTCCAAATGCAAGTTCTGCAAGAGAACAAGCTTCTAGCGCTGCAGGTACCAGTAGGTTGTCAGATGCTGATGGAACAAAGGTAAAAGATCAGGGCAACAAAAGAGGTAGCCGGTCCATGAGACAGAAACTTATGGCTTCAATTGATCTCAAGTGCAAGTTAGTAGACTTTGGTAATGCTTGCTGGACATATAAACAGTTCACAAATGATATCCAGACAAGACAATATCGGTGCCCAGAGGTGTTACTTGGATCAAAATATTCTACATCTGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTTGCGACTGGAGATGTATTATTTGATCCTCACAGCGGTGACAACTTTGACAGGGATGAGGACCACTTAGCATTGATGATGGAACTTCTCGGAATGATGCCACGTAAGATTGCACTAGGGGGCCGTTATTCGCGTGATTTCTTTAACAGATATGGTGACTTGAGGCACATACGTCGGTTGCGATTCTGGCCCTTGAATAAAGTCCTCATGGAGAAGTATGATTTTAGTGAGCAAGATGCAAACAGCATGACTGACTTTTTGGTTCCTATCCTTGACTTTGTTCCTGAAAAACGGCCTACAGCTGGTCAATGTCTGCTACATCCATGGATCAATGCAGGCCCACGTCTTTTGGAGCCGTCAATGCCTTCTTCCAATCACAACCCTGCTGCTGAAACAGCTATTTCTGACCAGAAGAAAAGGGACAAAGATGAGAGGGAAGCCATGGAGGCAGGAATGGGGAACATTGCCATCAATTCAGAATCTAAACCACTCATGCACTCTCCATCTAAGAGAGCCTTCCAAGGCAGCCACAAGTAG 1647 0.4602 MGDNNLNHHEAADSSDFTSEDEGTEDYRRGGYHPVLIGDAFKAGRYVVQSKLGWGHFSTVWLAWDTHHSRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGMPINMVKEICFHILVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDRIKSGAPLILPNTKDKTVLESAAAKDTKTANGDLIKNHKKKIKRKAKQAAHGCVEKEASEGVEGNPETSGAVASSPNASSAREQASSAAGTSRLSDADGTKVKDQGNKRGSRSMRQKLMASIDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVLMEKYDFSEQDANSMTDFLVPILDFVPEKRPTAGQCLLHPWINAGPRLLEPSMPSSNHNPAAETAISDQKKRDKDEREAMEAGMGNIAINSESKPLMHSPSKRAFQGSHK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2554 548 ProSiteProfiles Protein kinase domain profile. 46 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2554 548 MobiDBLite consensus disorder prediction 503 519 - -
Lja5g2554 548 Gene3D Transferase(Phosphotransferase) domain 1 129 481 - -
Lja5g2554 548 CDD STKc_SRPK 34 480 - -
Lja5g2554 548 MobiDBLite consensus disorder prediction 242 256 - -
Lja5g2554 548 MobiDBLite consensus disorder prediction 262 288 - -
Lja5g2554 548 Pfam Protein kinase domain 317 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2554 548 Pfam Protein kinase domain 46 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2554 548 MobiDBLite consensus disorder prediction 1 28 - -
Lja5g2554 548 SUPERFAMILY Protein kinase-like (PK-like) 41 493 IPR011009 -
Lja5g2554 548 MobiDBLite consensus disorder prediction 240 308 - -
Lja5g2554 548 Gene3D Phosphorylase Kinase; domain 1 22 128 - -
Lja5g2554 548 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 542 - -
Lja5g2554 548 MobiDBLite consensus disorder prediction 488 502 - -
Lja5g2554 548 MobiDBLite consensus disorder prediction 9 28 - -
Lja5g2554 548 MobiDBLite consensus disorder prediction 487 548 - -
Lja5g2554 548 PANTHER SERINE KINASE-LIKE PROTEIN 13 542 - -
Lja5g2554 548 MobiDBLite consensus disorder prediction 291 305 - -
Lja5g2554 548 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Lja5g2554 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Lja5g2554 548 SMART serkin_6 46 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2554 Lja-Chr5 50171277 50178085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2554 12 532 EF-hand Containing Proteins AT5G22840 69.656 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lja5g2554 Pkinase 2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2554 K08832 - gmx:100803070 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2554 5 50171277 50178085 Lja5g2554 5 50171277 50178085 ECH