Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2553 ATGGAGTGGAATGGGAGCACCACCAGACGCTTTGTTCCTCGTGCAGAATCTTCCTTCAGCTTCCTCTACAACAACAACAACTATTACCACACTTCATATCCAGGAATGGAAGTGAAACAGCAAGCACTGTCTATGGAGACACCTCCGGCGATGGAAAAATTGAACTACGGTGGGAACCAGGAGAAGAAGAAGCGGTTAACCTGTGAGCAGCTTGACTCACTGGAGAGTAGCTTCCAGCAGGAGATAAAGTTGGACCCTGACAGGAAGATGAAGCTTTCCAAGGAATTAGGCCTCCAGCCTCGCCAGATCGCTGTTTGGTTCCAGAATAGGCGTGCAAGGTGGAAAACCAAGCAGCTTGAACACTTGTACGATACACTTAAACAGGAATTTGATGCCATAGCCAAGGAAAAACACAAGCTTGAGGAAGAGGTTATGAAGTTGAAGGGTATGCTGAGAGAGCAAGGTTGTAGAACGCAACAAGTATCAGCAGGTTATACTACAGAAGTCTCTGCGGAAGAAACAGTGGAAAGCACGTCAGAGCTGGCTCTGCGTTGCTCCAAGATTCATCATCATCATCATCATCATCATCAGATTCATCAGCAGCAGCAGAATACTGCTAATGCTGATCAGGGAAACTGTTCTCTCACTCACACTCACAGTCACATGGCCGAGGATTGTAGCACAGTTCCAGTCATGTCCTATTGGCCTGGGTTACCTTATTATCCCTAA 729 0.4691 MEWNGSTTRRFVPRAESSFSFLYNNNNYYHTSYPGMEVKQQALSMETPPAMEKLNYGGNQEKKKRLTCEQLDSLESSFQQEIKLDPDRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDTLKQEFDAIAKEKHKLEEEVMKLKGMLREQGCRTQQVSAGYTTEVSAEETVESTSELALRCSKIHHHHHHHHQIHQQQQNTANADQGNCSLTHTHSHMAEDCSTVPVMSYWPGLPYYP* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2553 242 Gene3D - 57 122 - -
Lja5g2553 242 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Lja5g2553 242 MobiDBLite consensus disorder prediction 189 212 - -
Lja5g2553 242 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Lja5g2553 242 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Lja5g2553 242 Coils Coil 123 143 - -
Lja5g2553 242 CDD homeodomain 62 118 IPR001356 GO:0003677
Lja5g2553 242 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Lja5g2553 242 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Lja5g2553 242 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 196 - -
Lja5g2553 242 SUPERFAMILY Homeodomain-like 48 119 IPR009057 -
Lja5g2553 242 SMART HOX_1 60 121 IPR001356 GO:0003677
Lja5g2553 242 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 196 IPR045224 GO:0003700
Lja5g2553 242 Pfam Homeobox associated leucine zipper 117 151 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2553 Lja-Chr5 50155713 50157354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2553 11 161 Homeobox Transcription Factor Family AT2G36610 49.711 1.36e-44 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja5g2553 Homeodomain 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2553 - - lja:Lj0g3v0279669.1 390.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2553 5 50155713 50157354 Lja5g2553 5 50155713 50157354 ECH
Lja5g2553 5 50155713 50157354 Lja1g0761 1 7389305 7390787 PCT