Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2552 ATGGAAGGCAATGGACTAGGTAGTGGAATGTTTTCTACTAGCATTAGTTCTGGTTTGCTAGGAGTAGAAAACAACAACAACCCTTTACAGCAGCAAAACCTCACCAATCAGCAAAATCCTCATCATTTGCATCATCCCCAGATGGTTTCTTATGACCAACAACAACAGCTACAGCAACCAATCAAACATGGGTACTCTCCCTATTCTTCAGCCAAGAACAAGCAACAACAAAGCTCAATCAGTGATGATGATGAGCTTGGTTTCCCTGCTGATGAAACCTCTGGGGATCCCAAGAGGAAGATTTCACCGTGGCAGAGGATGAAGTGGACGGACACCATGGTTAGGCTCTTGATTATGGCGGTTTACTACATTGGTGATGAAGCTGGTTCTGAAGGGACTGATCCCAATGGGAAGAAGAAGCAATCAGGGTTGCTGCAGAAGAAAGGGAAGTGGAAATCAGTGTCAAGGGCTATGATGGAAAAGGGGTTCTATGTGTCTCCTCAGCAATGTGAGGATAAGTTCAATGATTTGAACAAGAGGTACAAGAGGGTGAATGATATACTTGGAAAGGGAACAGCTTGCAGGGTGGTTGAGAATCAGAGCTTGCTGGACACAATGGACTTGTCACCAAAGATGAAAGAGGAAGTGAGGAAGTTGCTCAATTCCAAGCATTTGTTCTTCAGGGAAATGTGTGCTTACCATAATAGTTGTGGTCATGGAGCTTCTCCTGGTGAAACACCTCAGGCTCAGGCTCAGGCTCAACCACAACAGCAGCAGCAGCAGGAGAATCAACAGCAACAGTCATGTTTTCATTCATCAGAGACTGCAAGTTTGGGTGTGTCAGGGGCAGAGGGATTGAGGATGATGAAATTGGGAAGTGGGGAGGAGGATGAGGATGAAGAAGAGGAAGAGGATTCTGAGGAATCTTCTGATGATGATGAAGATGAATCAGCAGAAGGTGGTTCAAGGGGAACTCTAGTTGATGAGGATGAGAATGACAATGGAAGGTCATCAAGGAAGAGGACAAGAAAATCAGCAGGGTGTTCTGTTTCTGTGTCATCAACACCATCTCAATTGGTGCAGCAACTGAACACTGAGGTGAGTGGTGTGCTCCAAGATGGGGGTAAGAGTCCTTGGGAGAAGAGGCAATGGATGAGGAGCAGGATAATGCAGTTGGAGGAGCAGCAATTGAGCTATCAAACTCAAGCCTTTGATCTGGAAAAGCAAAGGGTGAAATGGGCAAGGTTTAGCAGCAAGAAGGAGAGGGAAATGGAAAGAGCCAAACTTGAAAATGAGAAAAGAAGATTGGAAAATGAGAGAATGGTTTTGATTATTCATCAGAAGGAGCTTGAATTGATGAATCTTCAACACCAACAGCAGCAACAACAGCAACATTCTTCCACCTAG 1407 0.4499 MEGNGLGSGMFSTSISSGLLGVENNNNPLQQQNLTNQQNPHHLHHPQMVSYDQQQQLQQPIKHGYSPYSSAKNKQQQSSISDDDELGFPADETSGDPKRKISPWQRMKWTDTMVRLLIMAVYYIGDEAGSEGTDPNGKKKQSGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQSLLDTMDLSPKMKEEVRKLLNSKHLFFREMCAYHNSCGHGASPGETPQAQAQAQPQQQQQQENQQQQSCFHSSETASLGVSGAEGLRMMKLGSGEEDEDEEEEEDSEESSDDDEDESAEGGSRGTLVDEDENDNGRSSRKRTRKSAGCSVSVSSTPSQLVQQLNTEVSGVLQDGGKSPWEKRQWMRSRIMQLEEQQLSYQTQAFDLEKQRVKWARFSSKKEREMERAKLENEKRRLENERMVLIIHQKELELMNLQHQQQQQQQHSST* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2552 468 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 1 468 - -
Lja5g2552 468 Pfam Myb/SANT-like DNA-binding domain 106 232 IPR044822 -
Lja5g2552 468 MobiDBLite consensus disorder prediction 241 279 - -
Lja5g2552 468 MobiDBLite consensus disorder prediction 128 147 - -
Lja5g2552 468 PANTHER F16F4.11 PROTEIN-RELATED 1 468 - -
Lja5g2552 468 MobiDBLite consensus disorder prediction 344 359 - -
Lja5g2552 468 Coils Coil 389 409 - -
Lja5g2552 468 MobiDBLite consensus disorder prediction 319 340 - -
Lja5g2552 468 MobiDBLite consensus disorder prediction 238 359 - -
Lja5g2552 468 MobiDBLite consensus disorder prediction 19 83 - -
Lja5g2552 468 MobiDBLite consensus disorder prediction 295 318 - -
Lja5g2552 468 Gene3D - 109 183 - -
Lja5g2552 468 Coils Coil 417 465 - -
Lja5g2552 468 MobiDBLite consensus disorder prediction 19 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2552 Lja-Chr5 50132934 50135018 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja5g2552 Myb_DNA-bind_4 7.4e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2552 - - gmx:100816661 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2552 5 50132934 50135018 Lja5g2552 5 50132934 50135018 ECH
Lja1g0758 1 7367798 7369574 Lja5g2552 5 50132934 50135018 PCT