Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2549 ATGGCCTCTTGCGGCGACGACGACGACGACGATTTCTCACTCCTCCGTGACGACAACCACGACCACCACCTCCACCAACCCTACGCGCCTCATCACCACAACCACCACTTCACCTCCCAACCGAAACCCGTCAACGTCGACGACGACGCCGCCGCCGAGGATTACGGAAACCCGTTCGACGACGACGCCGTGAGCGAGAAACGTAAGGACCATGACGAGATCGGCGAAGGGACTTCACCGTACGCGTTCAACAAGAGGCCGAGGTCGACGTCCACGTGCGGATCCGGCGGCGGCGGTGCAGAGTATCGGAAGGATCGTGAGGAGTGGAGCGATACGGCGATTATGTGCTTGCTTGAGGCGTACACGGAGAAGTTCACGCAGCTGAATCGGGGGAACCTGAGAGGGAGGGATTGGGAGGAGGTTGCGGCGGTGGTGAGTGAACGGTGTGAGAATCAATCGAAGAGCGTGGAGCAGTGTAAGAACAAGGTGGATAATCTGAAGAAGCGGTATAAGCTGGAGAGGCATAGGATGAACAATGGTTGCATCTCCAGTAGTCACTGGCCTTGGTTCAAGCAGATGGAACACATCGTTGGAAATTCTCTTCCGACCAAATTCTCCGACGAGGACAAAGCACTTGTTCCAGCTTCCAATTCACCCAGACAATCAAAGAGATATGGAGTAGCAACGCCTAGCAGTGGAGGTCAAGTAAACAGCATGAAGTCCAAAGCATTGTCAAACCTTAGATGGCGGCGGGTAGTGCTCAAAATTAGTGGAGCAGCTCTTACTGGATCTGATACCTGCAATCTTGACCCTAAGGTGGCCATGTTAGTTTCAAGTGAAGTTGCAATAGCTTCCCGCCTTGGCGTCGAGGTGGTGATTGTTGTTGGAGGTCGTAATTTCTTCTGTGGAGATGCTTGGGTGACTGCGACAGGCTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCAACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCATTAGCCATGCAGGAGTTTGCTGAACCATACAATAGGCAGCGGGCCATCAGACATCTTGAGAAAGGAAGAGTTGTTATATTTGGCGGTGTTGGTATAGGTGCTGGCAACCCCCTATTCTCAACTGACATTGCTGCAGCTCTTCGTGCTTCAGAGCTTAATGCTCAGGCTGTCCTCAAAGGTACCAACGTAGATGGCGTATATGACTGCAACTCACGAGACAACAATTTCACTTTCGAGCATATATCCTTCAGGGAATTGGCATCGAGAGGAGTCACCTCTATGGATATGTCAGCACTGACATTCTGTGAGGAAAATGCTATTCCAGTTGTGGTTTTTAATCTATTGGCACCTGGGAACATCTCAAAAGCTTTGTGTGGAGAACAAGTTGGCACACTAATTGACCAAGCTGGAGCAATAAGCTAA 1467 0.5044 MASCGDDDDDDFSLLRDDNHDHHLHQPYAPHHHNHHFTSQPKPVNVDDDAAAEDYGNPFDDDAVSEKRKDHDEIGEGTSPYAFNKRPRSTSTCGSGGGGAEYRKDREEWSDTAIMCLLEAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRMNNGCISSSHWPWFKQMEHIVGNSLPTKFSDEDKALVPASNSPRQSKRYGVATPSSGGQVNSMKSKALSNLRWRRVVLKISGAALTGSDTCNLDPKVAMLVSSEVAIASRLGVEVVIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSILLQSTLEKMGVQTRVQTSLAMQEFAEPYNRQRAIRHLEKGRVVIFGGVGIGAGNPLFSTDIAAALRASELNAQAVLKGTNVDGVYDCNSRDNNFTFEHISFRELASRGVTSMDMSALTFCEENAIPVVVFNLLAPGNISKALCGEQVGTLIDQAGAIS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2549 488 MobiDBLite consensus disorder prediction 1 104 - -
Lja5g2549 488 Coils Coil 149 176 - -
Lja5g2549 488 MobiDBLite consensus disorder prediction 60 76 - -
Lja5g2549 488 CDD AAK_UMPK-PyrH-Ec 250 482 IPR015963 GO:0005737|GO:0006221|GO:0033862
Lja5g2549 488 Pfam Amino acid kinase family 251 461 IPR001048 -
Lja5g2549 488 PANTHER URIDYLATE KINASE 61 488 - -
Lja5g2549 488 MobiDBLite consensus disorder prediction 213 238 - -
Lja5g2549 488 Hamap Uridylate kinase [pyrH]. 247 482 IPR015963 GO:0005737|GO:0006221|GO:0033862
Lja5g2549 488 SUPERFAMILY Carbamate kinase-like 248 481 IPR036393 -
Lja5g2549 488 Gene3D - 109 172 - -
Lja5g2549 488 MobiDBLite consensus disorder prediction 215 238 - -
Lja5g2549 488 Gene3D - 244 482 IPR036393 -
Lja5g2549 488 Pfam Myb/SANT-like DNA-binding domain 106 196 IPR044822 -
Lja5g2549 488 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 61 488 IPR011817 GO:0006221|GO:0009041
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2549 Lja-Chr5 50100365 50104712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2549 68 206 Trihelix Transcription Factor Family AT3G14180 34.266 1.04e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja5g2549 AA_kinase 5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2549 - - gmx:100805176 788.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2549 5 50100365 50104712 Lja5g2549 5 50100365 50104712 ECH