Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2548 ATGAACCATGTCTTGTTCTTCTTGTTGTTCTTCTTCTTCCACTTGGTGTTACCATGTCTGTCGACACTGAGTCTCCACCATAATGACACACATGCACTCACCCTCTTCCGCCGCCAAACTGACTCACACGGCCGCCTCCTCTCCAACTGGACAGGAGGCGATGCCTGCGTCGCCGCCTGGCGCGGCGTCGCTTGCTCCCAAAACGGCCGAGTCACTTCCCTCTCCCTCCCTTCCCTCAACCTCCGAGGACCCATCGACGCTCTCTCCCCTCTCTCCCACCTCCGCCTCCTCGACCTCCATGAAAACCGCCTCAACGGCACGGTTTCCCCGTCGCTCCTCTCCAACTGCACCAACCTCAAGCTCCTCTACCTCGCCGGAAACGACTTCTCCGGCCACATCCCGCCGGAGATTTCCTCCCCGAAGTTCCTCCTCCGCGTCGATCTCTCTGACAACAACCTCGCCGGCGACCTCCCCGGAGAAGTTTCTCATCTCTCCAGCCTCCTCACCCTCCGCCTCCAGAACAACGCCCTCACCGGCCGCGTCCCCGACCTCTCCGCCGCCATGCCGAACCTCACAGAACTCAACTTGACCAACAACGAATTCTCCGGCCACGTACCCTCCTCCATGCTCAGCAAATTCGGCGAAGAAACATTCTCCGGCAACGAAGCTCTCTGCAGTGCCAGCGCCGGAACACTCCCTGCTTGCTCCACCGCCGACAACCTCCCTTCTCATCCTCCTGTTCAAACCGTTCCTTCAAACCCGAGCCGGTTCCCGGAAACCAGCATAATCGCCAGACCGGGAACCAAACCACCGCGCAAGGGTTTAAGCCCCGGCGCCATCGTCGCCATAGTGGTGGCGAATCTCGTCGCGCTGCTAGTTGTAACTTCCTTCGTTGTAGCTCATTGCTGTGCCCGAGGAAACGGGTCCCACCCTAACTCCCTGGTGGGTCCCAGTGAGAAACGGAAGAGTGGGAGCAGTTACGGCAGCGAGAAGAAGGTGTACGCGAGCGGCGACAGCGACGGAACCAGCGGCACGGAGAGGAGCAAGCTGGTGTTTTTCGACCGGAGGGGTGAGTTTGAATTGGAGGATCTTCTCCGTGCTTCGGCGGAGATGCTCGGGAAGGGTAGTTTGGGAACGGTTTATAGGGCGGTGCTTGATGATGGATCCACCGTTGCTGTGAAGAGGCTCAAGGATGCAAATCCATGTGCTAGACATGAATTTGAACAGTATATGGATGTGATTGGGAAGCTTAAGCATCCAAACATTGTTAAGCTTAGAGCTTATTACTATGCTAAAGAAGAAAAGCTTCTTGTCTATGATTACCTCTCCAATGGAAGCCTACATGCTCTTCTTCATGGGAATCGTGGTCCGGGGAGAATTCCGTTGGATTGGACTACTAGAGTGAGCTTGGCGTTAGGAGCGGCGAGAGGGTTGGCTCGGATTCATGCGGAGTACAGCACGGCGAAAGTGCCTCATGGGAATGTGAAATCTTCCAATGTGCTTCTGGACAAGAATGGTGTGGCTTGCATCTCTGATTTCGGGTTGTCATTGCTGCTGAACCCGGTTCATGCGATTGCGAGATTGGGTGGTTATAGGGCACCGGAACAGGCTGAGCAGAAGAGGCTTTCACAGCAAGCTGATGTGTATAGTTTTGGGGTGTTGTTGTTGGAAATTCTAACAGGGAGAGCTCCTAATTCATCATCACAGTATCCTTCCCCTGAGAAACAAGAAGCTAGTGTGGATCTTCCAAATTGGGTTCGCTCTGTTGTGAAGGAAGAGTGGACTGCGGAGGTGTTTGATCAAGAACTTTTGCGGTACAAGAACATTGAGGAAGAGCTTGTGTCAATGCTGCAAGTTGGGTTGGCTTGTGTAGTGCCGCTTCCGGAGAAGAGGCCAACCATGGCGGAGGTTGTGAAGATGGTTGAGGATATCAGGGTGGAGCAATCTCCTCTGGGGGAGGACTATGATGAATCGCGAAATTCGCTTTCGCCTTCAGTTCCAACCACTGAAGATGGTCTTGCTTAG 2025 0.5457 MNHVLFFLLFFFFHLVLPCLSTLSLHHNDTHALTLFRRQTDSHGRLLSNWTGGDACVAAWRGVACSQNGRVTSLSLPSLNLRGPIDALSPLSHLRLLDLHENRLNGTVSPSLLSNCTNLKLLYLAGNDFSGHIPPEISSPKFLLRVDLSDNNLAGDLPGEVSHLSSLLTLRLQNNALTGRVPDLSAAMPNLTELNLTNNEFSGHVPSSMLSKFGEETFSGNEALCSASAGTLPACSTADNLPSHPPVQTVPSNPSRFPETSIIARPGTKPPRKGLSPGAIVAIVVANLVALLVVTSFVVAHCCARGNGSHPNSLVGPSEKRKSGSSYGSEKKVYASGDSDGTSGTERSKLVFFDRRGEFELEDLLRASAEMLGKGSLGTVYRAVLDDGSTVAVKRLKDANPCARHEFEQYMDVIGKLKHPNIVKLRAYYYAKEEKLLVYDYLSNGSLHALLHGNRGPGRIPLDWTTRVSLALGAARGLARIHAEYSTAKVPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYRAPEQAEQKRLSQQADVYSFGVLLLEILTGRAPNSSSQYPSPEKQEASVDLPNWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLQVGLACVVPLPEKRPTMAEVVKMVEDIRVEQSPLGEDYDESRNSLSPSVPTTEDGLA* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2548 674 MobiDBLite consensus disorder prediction 241 272 - -
Lja5g2548 674 ProSiteProfiles Protein kinase domain profile. 366 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2548 674 SMART LRR_typ_2 164 187 IPR003591 -
Lja5g2548 674 SMART LRR_typ_2 116 140 IPR003591 -
Lja5g2548 674 SMART LRR_typ_2 188 212 IPR003591 -
Lja5g2548 674 SMART LRR_typ_2 91 115 IPR003591 -
Lja5g2548 674 Gene3D Ribonuclease Inhibitor 26 140 IPR032675 -
Lja5g2548 674 Gene3D Ribonuclease Inhibitor 141 222 IPR032675 -
Lja5g2548 674 Pfam Protein kinase domain 370 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2548 674 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 11 665 - -
Lja5g2548 674 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Lja5g2548 674 SUPERFAMILY L domain-like 26 210 - -
Lja5g2548 674 MobiDBLite consensus disorder prediction 309 344 - -
Lja5g2548 674 Gene3D Phosphorylase Kinase; domain 1 340 441 - -
Lja5g2548 674 SUPERFAMILY Protein kinase-like (PK-like) 370 641 IPR011009 -
Lja5g2548 674 MobiDBLite consensus disorder prediction 311 344 - -
Lja5g2548 674 Gene3D Transferase(Phosphotransferase) domain 1 442 662 - -
Lja5g2548 674 MobiDBLite consensus disorder prediction 649 674 - -
Lja5g2548 674 CDD STKc_IRAK 372 644 - -
Lja5g2548 674 PANTHER LRR RECEPTOR-LIKE KINASE 11 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2548 Lja-Chr5 50096827 50099506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2548 22 670 Receptor kinase-like Gene Family AT2G36570 64.608 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lja5g2548 Pkinase 1.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2548 - - gmx:102660494 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2548 5 50096827 50099506 Lja5g2548 5 50096827 50099506 ECH
Lja1g0756 1 7356160 7359317 Lja5g2548 5 50096827 50099506 PCT