Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2546 ATGGCCTGCATGTGGCGCAAGAATGGCGGTTGCGGCAGCAGCGGGAAGAAGCTGCCGCCGGACGTGCCAAGAGGTCACTTGGCGGTGACGGTAGGAGAAGCGAAAAAGAGGTTTGTGATAAGAGCTGACTACCTGAACCATCCGCTGCTTCAACAACTTTTAGACCAAGAAGCATATGAAGGAAATGGCTTCAACAAGAGTGGTCCTCTAGCTATACCTTGTGATGAGTTCCTATTTGAAGACATTCTTCACTCCCTTCGCCGTTCTTCTTCTTCTTCCCATGTGCCTACCAAGAAGCTAGATTTGAGCTTGTCCAAAGACTCTGTTTCACTACTTCAAGGCTTTGATTGCAAAAGGATAAGCAACAACTACAAGCATTAA 381 0.4751 MACMWRKNGGCGSSGKKLPPDVPRGHLAVTVGEAKKRFVIRADYLNHPLLQQLLDQEAYEGNGFNKSGPLAIPCDEFLFEDILHSLRRSSSSSHVPTKKLDLSLSKDSVSLLQGFDCKRISNNYKH* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2546 126 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 99 IPR003676 GO:0009733
Lja5g2546 126 Pfam Auxin responsive protein 16 86 IPR003676 GO:0009733
Lja5g2546 126 PANTHER AUXIN RESPONSIVE SAUR PROTEIN 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2546 Lja-Chr5 50059466 50059846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2546 1 93 Calmodulin-binding Proteins AT4G34750 52.688 3.30e-27 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2546 K14488 - gmx:100777611 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2546 5 50059466 50059846 Lja5g2546 5 50059466 50059846 ECH