Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2542 ATGGAACAACCTGTAAACCTCTCAGCGCCGCCACACCCACAACCACTCATGATTAACATGAACGTGGCCAACACCACCACGACGCCGCCAGCGACGGTGCAAACCGCCACAACAACAACAACAACAGTGGCAACAGCAGCAACAGCAACAACAACACCGGGAAGCACTGAAGGAAGCTTGGATTTGTTTGCTAAGAAGAAGAGAGGAAGACCCAGAAAATACGACGCAGATGGGAACCTGAATCCGGCGTACAAGAAGAGTGCAACGCCGCCACAGAGATTCACTCTCTCCGCAACCGCAAACGAGTTTTCTGCCAAAAGGGGTCGTGGGAAACCTGCTACTGGGTTTGGAAACTACCACCTCTTTGCTTCTTTTGGTGAGGTTTTTGCAAGCTCTGCTTCTGGGGATTTCACACCGCATGTGGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATTATGTCATTCGCGCAGAAGAGTCCAAGAGGAATATGTATTCTTTCTGCCAATGGTCCTATCTCTAATGTCACCCTACGCCAACCTGGTTCTTGTGGTGGCATATTGACTTATGAGGGTCGGTTTGAGATTTTATCTTTGTCTGGATCCTTCTCGGTATCTGATAGTAGTGGCATGAAAAGTCGAAGTGCTGGATTGAGCGTCTCTCTAGCTGGTCCTGATGGTCGAGTGATAGGAGGTGGTGTTGCTGGTCTGTTGACAGCTGCTGGCCCCATCCAAATTGTAGTGGGAAGCTTCATGCCAAATGGTTACCTCAAGACCCATAAAAGGAAGTACCAACGTGAACATACAGTGGCATCCCCAACTTCAACTGGTCCAGAAACAGTCACAGGAGCAACACCTATCTCACAAGCAAATAGTGATGGTGAAAACTATATGATACCTATGACTCAGTCTCAGATACCACTTCAAATCCAGAGAGAATCTGTGAGTGTTCCAAGTGATAAACAGAGCCTAGATGGCACACCTGATGCTGCTGCTAATTGGAATGGTTCAGAAGAATATTCAGATCAGAGGACATCTCCAGACATCAACATATCTTTGTCTGATGAATAG 1074 0.4739 MEQPVNLSAPPHPQPLMINMNVANTTTTPPATVQTATTTTTTVATAATATTTPGSTEGSLDLFAKKKRGRPRKYDADGNLNPAYKKSATPPQRFTLSATANEFSAKRGRGKPATGFGNYHLFASFGEVFASSASGDFTPHVVTVYTGEDVAGKIMSFAQKSPRGICILSANGPISNVTLRQPGSCGGILTYEGRFEILSLSGSFSVSDSSGMKSRSAGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMPNGYLKTHKRKYQREHTVASPTSTGPETVTGATPISQANSDGENYMIPMTQSQIPLQIQRESVSVPSDKQSLDGTPDAAANWNGSEEYSDQRTSPDINISLSDE* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2542 357 MobiDBLite consensus disorder prediction 68 89 - -
Lja5g2542 357 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 24 355 IPR039605 GO:0003680
Lja5g2542 357 Gene3D - 139 272 - -
Lja5g2542 357 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 263 - -
Lja5g2542 357 MobiDBLite consensus disorder prediction 315 357 - -
Lja5g2542 357 MobiDBLite consensus disorder prediction 263 296 - -
Lja5g2542 357 Pfam Plants and Prokaryotes Conserved (PCC) domain 139 252 IPR005175 -
Lja5g2542 357 MobiDBLite consensus disorder prediction 270 296 - -
Lja5g2542 357 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 24 355 - -
Lja5g2542 357 ProSiteProfiles PPC domain profile profile. 134 277 IPR005175 -
Lja5g2542 357 CDD DUF296 138 252 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2542 Lja-Chr5 49973669 49977408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2542 63 291 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.301 1.07e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2542 - - gmx:100779227 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2542 5 49973669 49977408 Lja5g2542 5 49973669 49977408 ECH