Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2531 ATGAACCCGAACGATGAAAAATCTCCGAAATTTTCATCACCTTTGGACCCCTTTGATGCTCCATCTTCGATGGAGTTCGAAACTGGAGGTGGGTCTGTTCCGGTTCCGATGGGGTGCTTGCAGGGGACCCCTGTTCCGCCATTTCTGAGCAAGACTTTTGATTTGGTTGATGAACCTTCTCTGGATCCGATCATATCGTGGGGATCCAATGGTGTTAGCTTCGTGGTGTGGGATCCTTTGGAGTTTTCTAGGCTGGTTTTGCCTCGGCATTTCAAGCATAACAACTTCTCCAGTTTTGTTCGTCAGCTCAATACTTATGGATTCCGCAAGATTGACTCTGACAAGTGGGAGTTTTTCAATGATGCTTTCCAGCGAGGGAAGAAGCAGTTGCTGAAGAACATCCAAAGGCGCAGGACGCATCATTCTCAACAGGTTGGGAGCTATGTTGGATCTTCTTCTGATGCCGGGAAGTTCGGAGTTGAGGTTGAGATAGAAAAGCTGAGGAAGGAGAGGAGTGTGTTGATGCAAGAGGTGGTTGATTTGCAGCAACAGCAGCGAGAAACGGTTAAACATGCTGGTGAAGTGAATCAGAGGCTCCAATCTGCTGAGCAAAGGCAGAAACAAATGGTTTCTTTCTTGGCAAAGTTATTTCAAAACCCGAGCTTCTTAGCACGCCTTAAGCAGAAGAAGAAGGAACAAAGAGGTATAGAATCCCCAAGAGTGAGAAGAAAGTTTGTCAAACAGAATCCTTCAGAAACTCTCAAAGAAGACCAGATAGTGAGGTACCAACCCGATTGGGGAAATATAATCATGTCTTCTGAAACTCCTGAACTAAGTCCTGTTTCCGTTGAACATTCTCCTCACTACCTTTCACAGGATTTAGCAAGAGAAATGAGTGTAGGTGCAGAAGATTTGACTCCTCAAGTTGAGAATATTACATCAGATGAACTTGCTGCAGCACTGCCTGAGATTATGCCAACTCCAGAAATATTTGGAGATGGACCATCTAGCTTTAGACTTGAAGATACCTTAATGAAAGGGAAAAATGTCCTGAGTCCAAATCAAGAAATTCTTCCTGGGTATTTTCTTTCCTTCCCTGAGGTTTCGGCCTCGGAGAAAGGCTTTGCTGAGTTTTCACCTCTTGAAACTGAAAGCATGATCAAGCAAGAAGACCTATGGGACCCTGAGTTCAATGTTGATGTTGCTGCTTCTTCAAGCAGTGGGAATGAGCTTTGGGGAAATCATATGAATTATGGAGTTTCTGAATTTGGAGTCACAAGTGGTCTGTCAGAGTCAGACATGTGGGATATTGGCTTTGGAAGTTTGGGTATTGATCAGTGGCCAGTTGATGACGAAATAGCTGTTCAGCCAAAAGAAGATAGACCTAAGAATGAATAG 1398 0.4421 MNPNDEKSPKFSSPLDPFDAPSSMEFETGGGSVPVPMGCLQGTPVPPFLSKTFDLVDEPSLDPIISWGSNGVSFVVWDPLEFSRLVLPRHFKHNNFSSFVRQLNTYGFRKIDSDKWEFFNDAFQRGKKQLLKNIQRRRTHHSQQVGSYVGSSSDAGKFGVEVEIEKLRKERSVLMQEVVDLQQQQRETVKHAGEVNQRLQSAEQRQKQMVSFLAKLFQNPSFLARLKQKKKEQRGIESPRVRRKFVKQNPSETLKEDQIVRYQPDWGNIIMSSETPELSPVSVEHSPHYLSQDLAREMSVGAEDLTPQVENITSDELAAALPEIMPTPEIFGDGPSSFRLEDTLMKGKNVLSPNQEILPGYFLSFPEVSASEKGFAEFSPLETESMIKQEDLWDPEFNVDVAASSSSGNELWGNHMNYGVSEFGVTSGLSESDMWDIGFGSLGIDQWPVDDEIAVQPKEDRPKNE* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2531 465 ProSitePatterns HSF-type DNA-binding domain signature. 87 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g2531 465 Coils Coil 164 184 - -
Lja5g2531 465 Gene3D - 41 138 IPR036388 -
Lja5g2531 465 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g2531 465 PRINTS Heat shock factor (HSF) domain signature 48 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g2531 465 PRINTS Heat shock factor (HSF) domain signature 99 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g2531 465 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 35 455 IPR027725 -
Lja5g2531 465 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-3 35 455 - -
Lja5g2531 465 Pfam HSF-type DNA-binding 48 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g2531 465 SUPERFAMILY "Winged helix" DNA-binding domain 44 137 IPR036390 -
Lja5g2531 465 SMART hsfneu3 44 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja5g2531 465 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2531 Lja-Chr5 49721704 49723983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2531 19 460 HSF AT5G03720 42.702 6.78e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja5g2531 HSF_DNA-bind 4.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2531 K09419 - gmx:100780835 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2531 5 49721704 49723983 Lja5g2531 5 49721704 49723983 ECH