Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2528 ATGGAGAGTAGCTCACGCAGACCATTCGATAGATCGAGAGAACCGGGTCTGAAGAGACCCAGAATGATGGAAGAACCAGAGCGTGTTGCTGCTGCTCAGAATCCAAGTTCTCGGCAGTTTCTTCCTCAGCGACAGCAACAAGTGGCGGCTTCTGGGATTTCAACCTTGTCATCTGCTGCAAGGTTGAGAGCTGCAGCTAACAGTAGAGACTTGGAAAGCAGTGATTTCGGTCGCGGCGACGGTGGTGGGGGTTACCATCCACGGCCACCACCATTTCAGGAGCTTGTGGCTCAGTATAAGAGTGCCCTTGCTGAGCTTACGTTTAACTCGAAACCGATAATTACCAATTTGACGATAATTGCAGGCGAGAATCAAGCTGCGGAGCAGGCCATTGCAGCTACTGTTTGTGCCAACATTATAGAGGTTCCGAGTGAACAAAAGCTGCCATCACTCTATCTCTTAGACAGTATAGTTAAGAATATTGGGCGGGGTTATGTGAAATACTTTGCTGCCAGACTACCCGAGGTATTCTGCAAGGCATACCGACATGTTGATCCTGCTGTCCACCATAGTATGAGGCATCTTTTCGGAACATGGAGAGGAGTCTTTCCTTCTCAGACCCTTCAGGCTATTGAGAAGGAACTGGGCTTCACACCTGCAGTCAATGGTTCATCTTCCACATCTGCCACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCCAAGTATCCATGTTAATCCCAAGTATCTTGAAAGACAGCGTCTTCAGCAGTCCAGCAGGACTAAAGGAGTTGATGATATGTCTGGAGCAATTGCAAACTCAAATGATGACCCAGAGATGCCTGATAGAGCTTTGGGTGTTAAACGACCAAGGGCGGATCCTAGTGTTAGTGTTCACTACCACTTAGAAAATAATCAGCGCGCTCATAGAGATGCATTCAATGATTCTGTTCGGGAAAAGAGTATCAGTGCATCCTATGGAGGCAATGAATATGGTTCCGATCTTTCAAGGAATTTGGGCATGGGTACTGGCAGGACTGGTGGTAGGGTGGCCGAGTTAGGAAGTGACAAAAGTGGGTACAACAAAGCTGCTGGTGCTGGTGTTGCAGGGACCATATCTGGGCAAAGAAATGGTTTGAGTATCAAGAATAACTTTTTGAATACTGAAGCATCCATGATTTTGGATGCACGTAATCAGCCAAGACAAAACATTAATAGCCTACAGAGAGGCGTAATGTCAAATAGCTGGAAACATTCTGAGGAAGAGGAGTTCATGTGGGATGAGATGAATGCTGGATTGACTGGTCACGATGCAGCCAGTGTCCCTAACAACTTGAGCAAAGATTCTTGGACTTCTGATGATGAGAATTTGGAGGTTGAAGATAATCACCACCAAAGCAGAAATCCCTTTGGGGCAAATGTTGATACAGAAATGTCCATTGAATCTCAAGCAACTGAAAGGAAACAATTACCTGCATTTCGGCCTCATCCATCACTATCATGGAAATTGCAGGAGCAGCACTCAATTGATGAGTTGAATCAGAAGCCAGGTCACTCAGATGGATTTGTGTCAACTCTTGGTGCCCTACCTACCAATACTAATTCTGCTGCTACTAGGATGGGGAATCGGTCTTTACTGCCAAAGGCAACAATTGGCTTAGCAGGAAACCTGGGACAACTTCATTCTGTGGGAGATGAATCCCCTTCGAGAGAGTCAAGTTTGCGACAACAGTCTCCACCACCAGTTGGGAAATTCCATAGATCACAGCTAAGAGACTTGCAGAGTGGTTCATTCTCTTCAATGACGTTTCAGCCAAGTCACAAGCAGCAACTGGGCTCTTCGCACACTGAAGTTACTGCTAAGACTGAGAAGCCACACCTGTCTAAAGTTCCTCTGCCTCGAGAAACAGAGCAACCAACCACAACTCGTTTTGAAACTGCAGCTGGGAAGGGCGGAAAGTTATCCAACATGCCAATTACTAATAGGCTTCCTACTTCAAGAAGCTTGGATACAGGGAATCTTCCATCTATATTAGGAGTTCGGCCTTCCCAGTCAAGTGGTTCTTCCCCTGCCGGATTAATTCCTCCAGTGTCTGCAATTGCATCACCTCCCTCATTAGGTCGTCCCAAAGATAATTCCTCTGCTCTGCCAAAAATACCTCCAAGAAGGGCTGCACAGCCACCAAGGACATCTGCTCTACCACCAGCTTCCTCTAATCTCAAAAGTGCTGCAGTCCAGGCATCAAGTTCTGCCAATAATGCCTTAAATCCAATTGCAAACCTTTTAAACTCATTAGTTGCAAAGGGTTTGATCTCTGCAGAAACCGAGACAACAGCTAAGGTGCCATCTGAGATGCTGACTCGATTGGAAGATCAAAGTGACAGCATTACCACCAGTAGCTCTTTGCCTGGTGCTTCAGTGTCTGGTTCTGCAGTCCCAGTCCCTTCTACCAAAGATGAAGTAGACGATGGTGCAAAAACACCTATATCCTTATCTGAATCAACCAGCACAGAAATCAGAAATTTCATTGGCTTTGAGTTTAAGCCTGATGTAATCCGAGAGTTGCATCCATCTGTAATTAGTGGATTATTTGATGATTTTCCACATCATTGCAGCATTTGTAGCCTTAAGCTTAAATTCCAAGAACAGTTCGATAGACACTTGGAGTGGCATGCCACAAGAGAAAGAGAACACAGTGGTCTAATTAAGGCATCGAGATGGTATCTGAAATCAAGTGACTGGGTTGTTGGCAAGGTTGAAAGTCTATCTGAAAATGAGTTCGCTGATTCTGTAGATAGATATGGCAAGGAAACAGACAGAAATCAAGAGGATGCAATGGTTCTAGCTGATGAAAACCAATGCTTGTGCGTGTTGTGTGGTGAGCTATTTGAAGAGTTTTACTGTCAGGAAAATGGTGAGTGGATGTTCAAAGGGGCTGTTTATGTGCCTAACTCTGATATCAATGATGATATGGGAATTAGAGATGCGAGTACAGGAGGGGGTCCCATCATTCATGCAAGATGCTTATCAGAGAACCCAGTTTCCAGTGTCCTGAACATGGATTAA 3069 0.4542 MESSSRRPFDRSREPGLKRPRMMEEPERVAAAQNPSSRQFLPQRQQQVAASGISTLSSAARLRAAANSRDLESSDFGRGDGGGGYHPRPPPFQELVAQYKSALAELTFNSKPIITNLTIIAGENQAAEQAIAATVCANIIEVPSEQKLPSLYLLDSIVKNIGRGYVKYFAARLPEVFCKAYRHVDPAVHHSMRHLFGTWRGVFPSQTLQAIEKELGFTPAVNGSSSTSATLRSDSQSQRPPPSIHVNPKYLERQRLQQSSRTKGVDDMSGAIANSNDDPEMPDRALGVKRPRADPSVSVHYHLENNQRAHRDAFNDSVREKSISASYGGNEYGSDLSRNLGMGTGRTGGRVAELGSDKSGYNKAAGAGVAGTISGQRNGLSIKNNFLNTEASMILDARNQPRQNINSLQRGVMSNSWKHSEEEEFMWDEMNAGLTGHDAASVPNNLSKDSWTSDDENLEVEDNHHQSRNPFGANVDTEMSIESQATERKQLPAFRPHPSLSWKLQEQHSIDELNQKPGHSDGFVSTLGALPTNTNSAATRMGNRSLLPKATIGLAGNLGQLHSVGDESPSRESSLRQQSPPPVGKFHRSQLRDLQSGSFSSMTFQPSHKQQLGSSHTEVTAKTEKPHLSKVPLPRETEQPTTTRFETAAGKGGKLSNMPITNRLPTSRSLDTGNLPSILGVRPSQSSGSSPAGLIPPVSAIASPPSLGRPKDNSSALPKIPPRRAAQPPRTSALPPASSNLKSAAVQASSSANNALNPIANLLNSLVAKGLISAETETTAKVPSEMLTRLEDQSDSITTSSSLPGASVSGSAVPVPSTKDEVDDGAKTPISLSESTSTEIRNFIGFEFKPDVIRELHPSVISGLFDDFPHHCSICSLKLKFQEQFDRHLEWHATREREHSGLIKASRWYLKSSDWVVGKVESLSENEFADSVDRYGKETDRNQEDAMVLADENQCLCVLCGELFEEFYCQENGEWMFKGAVYVPNSDINDDMGIRDASTGGGPIIHARCLSENPVSSVLNMD* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2528 1022 MobiDBLite consensus disorder prediction 791 814 - -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 563 584 - -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 591 619 - -
Lja5g2528 1022 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 588 1020 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lja5g2528 1022 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 4 583 - -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 32 46 - -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 1 46 - -
Lja5g2528 1022 SMART 558neu5 94 216 IPR006569 -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 1 26 - -
Lja5g2528 1022 ProSiteProfiles CID domain profile. 91 219 IPR006569 -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 219 291 - -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 659 693 - -
Lja5g2528 1022 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 588 1020 - -
Lja5g2528 1022 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 4 583 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lja5g2528 1022 MobiDBLite consensus disorder prediction 559 742 - -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 219 243 - -
Lja5g2528 1022 Pfam CID domain 100 210 IPR006569 -
Lja5g2528 1022 Gene3D - 91 216 IPR008942 -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 67 91 - -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 791 830 - -
Lja5g2528 1022 SUPERFAMILY ENTH/VHS domain 94 217 IPR008942 -
Lja5g2528 1022 CDD CID_Pcf11 96 212 - -
Lja5g2528 1022 ProSitePatterns Zinc finger C2H2 type domain signature. 872 892 IPR013087 -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 436 475 - -
Lja5g2528 1022 MobiDBLite consensus disorder prediction 452 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2528 Lja-Chr5 49694974 49702363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2528 61 253 C2H2 Transcription Factor Family AT4G04885 52.850 2.06e-53 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2528 K14400 - gmx:100807857 1286.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2528 5 49694974 49702363 Lja5g2528 5 49694974 49702363 ECH
Lja1g0741 1 7175409 7180830 Lja5g2528 5 49694974 49702363 PCT