Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2522 ATGGAAATGGAAGATCACCACCACTATCATCATCAACAACAGTATGACGTGGCCACTGATCTCAGAAACCTCGTCAACCTACCAATAAGGCCGACCCACTTCCCTTCTGTACCGCCACACCCCACGGCAGAGCTTTTTCCCGGCCACCGCAATCTAACCCCCGTACCCACTCCCCACCACCACCACCAACAACAACAACAACAACAACAGTATGAGATGATGATGTTGATGCCACGTGGGGTTCACGACTTCACCCCCACCATCACCACTACTGTTGCCGCCACCGCCACCGCCAGTGCTTCAACTCCTCCTCCGGCCCTCAGTAGCAGTGGCTTTGATGCTGAGACCGCAGCTTGCTTCGGTGGAGACGCTTCCACTGGAAGATGGCCCAGACAAGAGACTCTCACTCTTCTTGAGGTCAGATCTCGCCTTGACCCTAAATTCAAAGAGGCTAATCAAAAGGGACCTTTGTGGGATGAAGTCTCAAGGATCATGTCTGAGGAACATGGATATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAACCTCTACAAATATTACAAGAAGACAAAAGAAGGCAAAGCAGGAAGGCATGATGGGAAGCACTACAGATTCTATCGCCAGCTTGAAGCCTTATATGGAGAAAACAGTACTAACACTGCAGGCTCAACCCTTCATTTCCAAACAAATCAAGAAATGTTTCAGACTCATCAGAACAACAAGCATTGTGATACTAGCACCAGCCTCACTAACTCAACTGAATTTGACACATCTTCATGTGATGATGATGACAATGATCATAGCATTGAAGAGAGTGAGTGTATGAGGAGAAAGAGGAGGAGTAGGAGGAGCTGGAAGGTGAAGATAAAAGAGTTCATTGATTTACAAGTGAAGAAGCTGGTGGAGAAGCAAGAGGAGTGGATGGATAAAATTGTGAAGACAATGGAGGAGAAAGAGAAGGAGAGGATTATAAGAGAGGAGGAGTGGAAGAAACAAGAGGAAAAGAGGTTAGAGAGGGAGCAAAGGTTTTGGGCTAAAGAGAGAGCATGGATTGAAGCCAGGGATGCTGCTCTAATGGAGGCTTTGCAAAATGTAACAGGAAGTAGTTTTCCCTACAATAATAACAATGATCATCAATCTTGTCTTCACAATCAAGGAAGTAACTATTGTGATATCAATGATCAAAGGAAGGAGAATGTTGGGAAGGCGCAAACAAGTGATGGTTCTTCACCTTCAAATTTCAATGTGGGGAATGTTGCTCCTAATGATAGCTGTAATTTTCCATTCTTGATGAGTGAGGGAGGAAATTGGTGGGATAGCTATGGGTTAAAGCTCAGTAAAGCAAACCAAAACCAATGA 1365 0.4527 MEMEDHHHYHHQQQYDVATDLRNLVNLPIRPTHFPSVPPHPTAELFPGHRNLTPVPTPHHHHQQQQQQQQYEMMMLMPRGVHDFTPTITTTVAATATASASTPPPALSSSGFDAETAACFGGDASTGRWPRQETLTLLEVRSRLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFYRQLEALYGENSTNTAGSTLHFQTNQEMFQTHQNNKHCDTSTSLTNSTEFDTSSCDDDDNDHSIEESECMRRKRRSRRSWKVKIKEFIDLQVKKLVEKQEEWMDKIVKTMEEKEKERIIREEEWKKQEEKRLEREQRFWAKERAWIEARDAALMEALQNVTGSSFPYNNNNDHQSCLHNQGSNYCDINDQRKENVGKAQTSDGSSPSNFNVGNVAPNDSCNFPFLMSEGGNWWDSYGLKLSKANQNQ* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2522 454 PANTHER - 30 371 - -
Lja5g2522 454 Pfam Myb/SANT-like DNA-binding domain 128 214 IPR044822 -
Lja5g2522 454 Gene3D - 129 191 - -
Lja5g2522 454 ProSiteProfiles Myb-like domain profile. 121 186 IPR001005 -
Lja5g2522 454 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 30 371 - -
Lja5g2522 454 CDD GT1 128 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2522 Lja-Chr5 49619792 49624288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2522 33 369 Trihelix Transcription Factor Family AT5G03680 49.157 3.00e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lja5g2522 Myb_DNA-bind_4 4.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2522 - - lja:Lj5g3v0712220.1 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2522 5 49619792 49624288 Lja5g2522 5 49619792 49624288 ECH
Lja1g0738 1 7154014 7157216 Lja5g2522 5 49619792 49624288 PCT