Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2521 ATGACTACTTACATGCCCAAAATACAGAAAAGAAAAGCTGGGAGGAAGAAGTTCCATGAAACGCGACACCCTACCTACAAAGGTGTGAAACAGAGAAACGGGAAGTGGGTGTGCGAGCTACGACAGCCTAACAACAAAAAAGCGCGTGTGTGGCTCGGAACATTTTCTCACCCTGACATGGCGGCGGTAGCCTATGATGTGGCCGCGTTGGCATTCAAGGGGGACGCTGCTTCCTTGAACTTCCCTCACGCGGCCACGTCGTTTCCGCGACTCAACTCGCGCACGTGTTCCGTTAGGGCGATTCAGTTCGCGGCCATGGAAGCAGCGGAGAAGCACTTTTCTTGTAGGGACGACGTCATGGATGAGGGTGAGATGATTGAAAGGAGTGATAAACGTGGCGGTTCTGATGAGCTATGTTTGGAGGTGGCAGGTTTGGGAGGAGATGATTCTGGAAGATTGTATTGGGATGAAGAGGAGGTGTTCAACTTGCCTGGGTTGATAAATAGCATGGCGGAAGGGTTGATCATCACGCCACCGGCGTTGGAGAGAGGCTTCAGTTGGGCTGGTGGGGAAACTACTGTGGACTTGACTCTCTGGGAAAACTGA 606 0.5215 MTTYMPKIQKRKAGRKKFHETRHPTYKGVKQRNGKWVCELRQPNNKKARVWLGTFSHPDMAAVAYDVAALAFKGDAASLNFPHAATSFPRLNSRTCSVRAIQFAAMEAAEKHFSCRDDVMDEGEMIERSDKRGGSDELCLEVAGLGGDDSGRLYWDEEEVFNLPGLINSMAEGLIITPPALERGFSWAGGETTVDLTLWEN* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2521 201 MobiDBLite consensus disorder prediction 1 24 - -
Lja5g2521 201 CDD AP2 26 84 IPR001471 GO:0003700|GO:0006355
Lja5g2521 201 MobiDBLite consensus disorder prediction 9 23 - -
Lja5g2521 201 SMART rav1_2 25 88 IPR001471 GO:0003700|GO:0006355
Lja5g2521 201 Pfam AP2 domain 24 74 IPR001471 GO:0003700|GO:0006355
Lja5g2521 201 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Lja5g2521 201 ProSiteProfiles AP2/ERF domain profile. 25 82 IPR001471 GO:0003700|GO:0006355
Lja5g2521 201 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 200 - -
Lja5g2521 201 SUPERFAMILY DNA-binding domain 25 83 IPR016177 GO:0003677
Lja5g2521 201 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 14 200 - -
Lja5g2521 201 PRINTS Ethylene responsive element binding protein signature 26 37 IPR001471 GO:0003700|GO:0006355
Lja5g2521 201 PRINTS Ethylene responsive element binding protein signature 64 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2521 Lja-Chr5 49596970 49597970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2521 4 199 AP2-EREBP Transcription Factor Family AT4G25470 41.379 6.84e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja5g2521 AP2 3.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2521 - - gmx:100778541 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2521 5 49596970 49597970 Lja5g2521 5 49596970 49597970 ECH
Lja1g0737 1 7113481 7114594 Lja5g2521 5 49596970 49597970 PCT