Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2520 ATGATGGCTCAAAACAAGCAACACTTGCTGCACGAACTCCTTAAGGAAGATCAAGAACCATTCCTTCTAAAGAACTACATTTCCCACCGCCGCAACCAGCTGAAAAGACCTTCTCAAAAGCCCACTCATCTCCAAGTCAAGAAACAAAAACCACCGTTACAACCACCACCAACAACCACAACAACCACCGTGCATAAAAATAACTCCAACAACAACAACTTCCTCTGCAGAAACGCTTGCTTCCTCGGAGCAACAACAAAATCTCCACTCTTCGAACTCGTTAAGAGTCCATGCAGGTCACCCTCTAACGCTATCTTCCTCCAAATCCCTGCTAAAACGGCGTCGCGTCTCCTCGACGCCGCCCTCAGGATTCAGAAGAATCAGTCCAAGACGAAGCTACCCTCTAACAAAAACAGCTTCGCGCTGCTTGGTTCGTTCTTCAAGAGGCTCACACAACGTGGTGGCAGAACCAGAAGGACTGAAATCGAAGGTAGAAACAATGTTAAGGTTTCTGTTAAGGATCTGTTGAGGTGGGACTCCTCAAACAACAGAAAAAGTTCTACTAGTGTGGAGGAAAAATTGAAAAAGGAGAATGGTTTTGTTGTTGAATGTTCTTGTGATGGAAGGGCTAGTAGTGCTGTATGGTCAGAGAAATCGATGGAAATGGGTGAAGATGAAGAAGAAGAAGAAACTTCTACTAGCTGTGGTGGTCACTCTTGTGAGAAAGAAAATGCAGTTTGTGATTGCTTTGATGATGATCGTGCCTTCTTCTGTCAAAGCCCTTTTAGATTTGTTCTTCAAAAAAGCCCCTCCGCCTCCTCTGGCCACCGCACACCGGAATTTTCCTCGGCAGCAGCGTCGTCTTCTCGCTGTGGAACACAGGACAAAGAAAATAATGTAGCTAATGGAGTCAACGAATTCCAATCAGAGGAAGAGAAGGAACAGTGCAGCCCAGTATCTATTTTAGAGACACCCTTTGAAGATGATGATGATTATGATGGCCATGAAAACGACGAAGAAGATGATGGCTATGATTTGGAGTGTAGCTATGCCAATGTACAAAGAACTAAGCAGCAGTTATTGGACAGGCTTAGTAGATTTGAGAAACTGGCAGAGTTAGATGCAATAGAACTTGAGAAGAGAATGTTAGATCAAGAAGATGAATTTGTAACTTATTCTGAAGAGGATGATGACGGCGAAACATCATGTGAAGAAAAGACCCCGGAAGACCTTAAGAGATTAGTTCATGATCTGATTATGGAAGAAGAGAGAGAGCTTGGTTCTTCAGAAGACAGGAATATGGTGATGAGAAGAGTTTGCAGGAAGCTGGAATTGTGGAGAGAAGTGGAACCCAACACCATTGATATGATGATGGAAGAGGATTTCTCTAGAGAGGAAAATGGGTGGAAGAAAAATTCAGAGCAGAAAAGAGAGCTAGCTGCGGAAATTGAGCTTGCTATCTTTTGCTTTCTAGTTGATGAAGTTTCAGAGGAACTAGTGTGTTAA 1506 0.4343 MMAQNKQHLLHELLKEDQEPFLLKNYISHRRNQLKRPSQKPTHLQVKKQKPPLQPPPTTTTTTVHKNNSNNNNFLCRNACFLGATTKSPLFELVKSPCRSPSNAIFLQIPAKTASRLLDAALRIQKNQSKTKLPSNKNSFALLGSFFKRLTQRGGRTRRTEIEGRNNVKVSVKDLLRWDSSNNRKSSTSVEEKLKKENGFVVECSCDGRASSAVWSEKSMEMGEDEEEEETSTSCGGHSCEKENAVCDCFDDDRAFFCQSPFRFVLQKSPSASSGHRTPEFSSAAASSSRCGTQDKENNVANGVNEFQSEEEKEQCSPVSILETPFEDDDDYDGHENDEEDDGYDLECSYANVQRTKQQLLDRLSRFEKLAELDAIELEKRMLDQEDEFVTYSEEDDDGETSCEEKTPEDLKRLVHDLIMEEERELGSSEDRNMVMRRVCRKLELWREVEPNTIDMMMEEDFSREENGWKKNSEQKRELAAEIELAIFCFLVDEVSEELVC* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2520 501 MobiDBLite consensus disorder prediction 269 306 - -
Lja5g2520 501 MobiDBLite consensus disorder prediction 324 343 - -
Lja5g2520 501 MobiDBLite consensus disorder prediction 269 343 - -
Lja5g2520 501 MobiDBLite consensus disorder prediction 31 66 - -
Lja5g2520 501 PANTHER OS04G0572500 PROTEIN 6 402 - -
Lja5g2520 501 MobiDBLite consensus disorder prediction 215 238 - -
Lja5g2520 501 PANTHER OS04G0572500 PROTEIN 403 501 - -
Lja5g2520 501 Coils Coil 350 370 - -
Lja5g2520 501 PANTHER - 6 402 - -
Lja5g2520 501 PANTHER - 403 501 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2520 Lja-Chr5 49533718 49537447 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2520 7 327 TRM (TON1 Recruiting Motif) Superfamily AT5G03670 41.329 2.09e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2520 - - lja:Lj0g3v0238219.1 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2520 5 49533718 49537447 Lja5g2520 5 49533718 49537447 ECH
Lja1g0734 1 7085755 7089685 Lja5g2520 5 49533718 49537447 PCT