Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2518 ATGGGTTCGTTCTCTGGCACTTGTGAAATTGTTGAAGCACATGAAGACCTGAATACAGGGAAAGCTGCAGGGATTTATCAGTCCAATTCTGGATATAGCTTGGCTGAGAAAAACCAGAAGCTTCCAGTGGTGAAACTAGGATACAAGGATAATCTAGATGATGATATTAATAAGCTGTTTGAATCCATCACTCTCAAATCCTCATCCAGGGATTCAGGCTTTTTACAAAATGGAACAAGCCCTAAGATGAAAGGTGCATTAAAAAAGCCAATTACTGGGGGCGTTCCTCGGTCCCCGCGGGTTGGGACATCTGAGCCGGTGACTTTGAAGCAGGCATTGAGAGACCATTGTATATCTAAGGCATCAGAAATGGCTGCTATGAAAAGATTATCAAAGTCATCAGCTTCTCCAAGAATATCTGAGGTTGGCAAGATTCAGACATTGTACAATGCGGTTGTAGCTGAAGCTAGACGATCTGGGCCTTCTAATGTTGAGAGTAAAGGAACGTTTGAAATATCTATATTGCCAGAAGAAAGCAAGTCACTTGCCTTGAATAAGGAATCTCAGTCTCATCAAACGGCCAAAAGCACACTATTGAGCCATAATGTTCATTCTACCAAAATTGTTGTCGCAACTACACAAAATGATGCTGGGGCTTCAATGATGCAAAGTGATTTAGCATGTTCATCAAGTAAAGTTGAGGTTCCATCTCCGGTGGAGCCTGTTCAAATAGAAAAACAAACATCTGCATCTTCTCCATCTAGTTGTGACACCAATCAAAGTAAATTAGATTTTCCTGAAAAAGCTCCATCCCCTAAAAAATTAGGAAATAAAACATCTGTGCCAAAGAGCGGAAGGAAAGGTAGGTTACAAACAGTATCCTCCTCATCTACTTCAGTAAATGGAAATAGAGTGTGCAAACTGTCACGCCATGGACCCCGCACAGTTAAATCGGTCATCAAAACCAAGAATTTGGGCAAGAAGAAACTAAAGCAGGATTCCATTTCTGCTTTGTCCGACCCTCCATCCGATGAAGTAAATAACAAGTCAGTTCCTGGTACAACTCAACTTGTTTGCGAGAGATGTTGCTGTGCTATAGAAAATACAAACATAGAAAACGACAAAGGTATTGGAACATTGGACTCTATTATCCCTGGTGGTGGAATATACTTGGGTGATGTGCACTCTGGCTCAGCATCGATTGACTGTGATAGCAGCAGAGAAGTTACACAAGTGAAAAAGAATACCAGATTGAAAGAGCAACTTGAATTTTCGCAAAGTTCAAAGAGTAGCCAAGGTGACTACAGTAGTAGTACAAGTACCAGTGATGAGAGCAATGTCAGTGGTTCAAGTTGTGGCAATAGACCTCACATGTCAAAGGATGTTAGATGGGAAGCCATTCGACATGCTCAAATGCAGCATGGGGTTTTAGGCTTGAGACACTTCAATCTTTTGAAGAAACTTGGTTGCGGAGACATTGGGACTGTATATCTAGCTGAGCTAATTGGAGAAAATTGTTTGTTTGCTATAAAGGTCATGGACAACGAATTTTTGGCAAGAAGGAAGAAATTGCCTAGGGCACAAACTGAAAGAGAAATTTTAAGGATGCTGGATCATCCTTTTCTTCCAACACTATATGCACAGTTTACTTCAGATAATCTTTCATGTCTGGTAATGGAGTATTGTCCAGGTGGAGATCTTCATGTCCTACGGCAGAAACAGCTTGGTAGAAGTTTTTCAGAGCCAGCAGCAAGGTTCTATGTTGCTGAAGTCCTGCTTGCATTGGAGTACTTGCATATGCTTGGTGTTGTTTACCGCGATTTGAAACCAGAAAACATTCTTGTTAGAGAAGACGGCCACATTATGCTCACAGATTTTGACCTTTCACTGAGGTGTGATGTTAACCCAACGCTTCTAAGATCATCAGATATGGACCCTGCTAAGATTTCTGGTCCTTGTGCACAATCAAGTTGCATACAGCCATTCTGCATTGAACCATCATGTCAAGTTTCATGCTTCAGCCCTAGATTCTTACCCCCAGCAGCAAAAGCAAGAAAATTAAAAGCTGATCTTGCTGCTCAGATCAGATCCTTGCCACAGCTCGTGGCTGAGCCCACAGATGCAAGATCAAATTCGTTTGTTGGCACTCATGAATACCTAGCTCCTGAGATCATCAAAGGAGAGGGACACGGAGCTGCGGTCGACTGGTGGACATTTGGCGTTTTTCTCTATGAGCTTTTATATGGTAGAACACCTTTCAAAGGTTCTAATAATGAAGAAACATTAGCCAACGTGGTATTGCAAGGTCTCAGATTCCCTGACAGCCCCTTTGTTAGCTTCCAAGCGAGGGATCTCATTAGAGGGTTGTTGGTTAAAGAGCCTGAAAACCGTTTGGGTACAGAGAAAGGAGCAGCAGAGATTAAGCAGCATCCCTTCTTCGAGGGCCTGAATTGGGCGTTGATACGCTGTGCTATCCCGCCAGAACTTCCAGACTTTTGCGAGTTTGCATTTTCAGACATGGCCCCTCAGCCACAAGGCAAGGGTGGTAAGTATTTACAGTGTAATGCAACAGGAGAACAAGTGGAATTTGAGTTGTTTTAA 2601 0.4248 MGSFSGTCEIVEAHEDLNTGKAAGIYQSNSGYSLAEKNQKLPVVKLGYKDNLDDDINKLFESITLKSSSRDSGFLQNGTSPKMKGALKKPITGGVPRSPRVGTSEPVTLKQALRDHCISKASEMAAMKRLSKSSASPRISEVGKIQTLYNAVVAEARRSGPSNVESKGTFEISILPEESKSLALNKESQSHQTAKSTLLSHNVHSTKIVVATTQNDAGASMMQSDLACSSSKVEVPSPVEPVQIEKQTSASSPSSCDTNQSKLDFPEKAPSPKKLGNKTSVPKSGRKGRLQTVSSSSTSVNGNRVCKLSRHGPRTVKSVIKTKNLGKKKLKQDSISALSDPPSDEVNNKSVPGTTQLVCERCCCAIENTNIENDKGIGTLDSIIPGGGIYLGDVHSGSASIDCDSSREVTQVKKNTRLKEQLEFSQSSKSSQGDYSSSTSTSDESNVSGSSCGNRPHMSKDVRWEAIRHAQMQHGVLGLRHFNLLKKLGCGDIGTVYLAELIGENCLFAIKVMDNEFLARRKKLPRAQTEREILRMLDHPFLPTLYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCDVNPTLLRSSDMDPAKISGPCAQSSCIQPFCIEPSCQVSCFSPRFLPPAAKARKLKADLAAQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSNNEETLANVVLQGLRFPDSPFVSFQARDLIRGLLVKEPENRLGTEKGAAEIKQHPFFEGLNWALIRCAIPPELPDFCEFAFSDMAPQPQGKGGKYLQCNATGEQVEFELF* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2518 866 MobiDBLite consensus disorder prediction 243 265 - -
Lja5g2518 866 MobiDBLite consensus disorder prediction 327 351 - -
Lja5g2518 866 CDD STKc_phototropin_like 480 831 - -
Lja5g2518 866 Gene3D Phosphorylase Kinase; domain 1 480 561 - -
Lja5g2518 866 SMART serkin_6 482 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2518 866 MobiDBLite consensus disorder prediction 336 351 - -
Lja5g2518 866 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 866 - -
Lja5g2518 866 MobiDBLite consensus disorder prediction 243 313 - -
Lja5g2518 866 MobiDBLite consensus disorder prediction 71 103 - -
Lja5g2518 866 MobiDBLite consensus disorder prediction 421 455 - -
Lja5g2518 866 ProSitePatterns Serine/Threonine protein kinases active-site signature. 603 615 IPR008271 GO:0004672|GO:0006468
Lja5g2518 866 MobiDBLite consensus disorder prediction 284 305 - -
Lja5g2518 866 Gene3D Transferase(Phosphotransferase) domain 1 706 822 - -
Lja5g2518 866 SUPERFAMILY Protein kinase-like (PK-like) 457 835 IPR011009 -
Lja5g2518 866 MobiDBLite consensus disorder prediction 414 457 - -
Lja5g2518 866 ProSiteProfiles Protein kinase domain profile. 482 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2518 866 Gene3D Transferase(Phosphotransferase) domain 1 562 630 - -
Lja5g2518 866 Pfam Protein kinase domain 483 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2518 866 Pfam Protein kinase domain 710 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g2518 866 PANTHER FLIPPASE KINASE 1-RELATED 1 866 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2518 Lja-Chr5 49473200 49478988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2518 1 866 AGC Kinase Gene Family AT3G52890 53.758 0.0 864
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lja5g2518 Pkinase 9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2518 - K08286 gmx:100813470 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0919 1 9036619 9038228 Lja5g2518 5 49473200 49478988 PCT
Lja1g0724 1 6956266 6960875 Lja5g2518 5 49473200 49478988 PCT