Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2510 ATGAAGGTGATCGCTGCTTACATGCTCGCCGTGCTCGGAGGCAACAACAGCCCCTCCGCCGCCGAAATCAAGAAAATCATCGGCTCCGTTGGAGGTGATGCTGATGATGATAGGATTGCATCATTTTTGTCTGAACTCAAGGGTAAAGATTTAGCTGAGGTTATTGCAGCTGGAAAGGAAAAGTTGGCATCTGTGCCTGCTGGTGGCGGTGGTATTGTGGTTGCTGCCGCTCCCGGTGGTGGTGGTGGTGCTGCTGCCCCAGCAGCTGCTGAGGCAAAGAAAGAGGAAAAGGTGGAGGAGAAAGAGGAATCTGATGATGATATGGGTTTCAGTCTCTTTGATTAA 345 0.5101 MKVIAAYMLAVLGGNNSPSAAEIKKIIGSVGGDADDDRIASFLSELKGKDLAEVIAAGKEKLASVPAGGGGIVVAAAPGGGGGAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2510 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 114 - -
Lja5g2510 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lja5g2510 114 Gene3D - 1 59 IPR038716 -
Lja5g2510 114 MobiDBLite consensus disorder prediction 80 114 - -
Lja5g2510 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lja5g2510 114 Pfam 60s Acidic ribosomal protein 17 113 - -
Lja5g2510 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2510 Lja-Chr5 49356471 49358078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2510 1 114 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 60.526 1.53e-27 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2510 K02943 - gmx:100500331 124.405