Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2498 ATGGCGGAAGAGCACAGATGTGAAGCTCCAGAAGGTCACCGTCTCTGCGTCAACAACTGCGGCTTCTCCGGCAGTCCAGCCACCATGGATCTCTGCTCCAAATGCTACAGAGACATCCGTTTGAAGGAACAGCAAGAAGCGTCGACCAAATCCACAATCGAAACCGCTCTCTCCAGCTCCTCCTCCGTCGCGAAACCGCCGTCTTCCACCTCATCTCCATCTCCAGCAGTCGATCTTGCACCGCCGGCTAAGGCGGAAACCGCGTCGATCTCATTAACCGCCGGTCCGATTCTCCAGGCGGCTCAGCCGAACCGGTGCGCGACGTGCCGGAAGCGCGTGGGGCTGACCGGGTTCAAGTGCAGGTGTGAGGTGACGTTCTGTGGGGCCCACAGGTACCCGGAGAAGCACGCGTGTTCGTTTGATTTCAAGACGGTGGGGAGAGAGGCAATAGCTCGGGAGAACCCGGTGGTGAGAGCGGAGAAGCTGCGGAGGATTTGA 498 0.5944 MAEEHRCEAPEGHRLCVNNCGFSGSPATMDLCSKCYRDIRLKEQQEASTKSTIETALSSSSSVAKPPSSTSSPSPAVDLAPPAKAETASISLTAGPILQAAQPNRCATCRKRVGLTGFKCRCEVTFCGAHRYPEKHACSFDFKTVGREAIARENPVVRAEKLRRI* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2498 165 SUPERFAMILY AN1-like Zinc finger 99 160 IPR035896 -
Lja5g2498 165 ProSiteProfiles Zinc finger AN1-type profile. 100 146 IPR000058 GO:0008270
Lja5g2498 165 MobiDBLite consensus disorder prediction 48 76 - -
Lja5g2498 165 SMART AN1_Zf_4 106 143 IPR000058 GO:0008270
Lja5g2498 165 MobiDBLite consensus disorder prediction 44 83 - -
Lja5g2498 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
Lja5g2498 165 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 165 - -
Lja5g2498 165 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Lja5g2498 165 Gene3D - 1 75 - -
Lja5g2498 165 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Lja5g2498 165 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Lja5g2498 165 Pfam AN1-like Zinc finger 106 142 IPR000058 GO:0008270
Lja5g2498 165 Gene3D - 83 151 IPR035896 -
Lja5g2498 165 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 6 1 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2498 Lja-Chr5 49132643 49135298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2498 1 165 C2H2 Transcription Factor Family AT3G52800 55.233 9.30e-54 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2498 - - gmx:100813749 243.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2498 5 49132643 49135298 Lja5g2498 5 49132643 49135298 ECH
Lja1g0715 1 6865353 6866481 Lja5g2498 5 49132643 49135298 PCT