Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2490 ATGGTTTGTCATCTCGAAAATCTTAGGCAGGACAAAGTAAAAGAGAAAATGGTGGTGACGGGTTCCGAGATGAACTCCCAAGGAGGTGACGGGGTGTCGAATCAGCAAGAAGCAAACAAGAACCATTCATCATTCTCATCGCTGGGAAGACAATCGTCCTCAATCTACTCCCTCACGCTCGATGAATTCCAGCACACACTCTGCGAACCGGGCAGGAATTTCGGCTCTATGAACATGGACGAGTTCATCAACAGCATTTGGAGCGCAGAAGAAAACCAAGCCACCAACAACAACAACCCTAACCAAAACAACAACAACATCAACAACAACAACAACTTGTCTCTGAGCGAAACCTCGACGGAGAAATTAGGCTTCATAAGGAAGCAGCCAAGCCTCCCTCGACATGGTTCTTTAACAATCCCTGCACCTCTTTGTAGGAAAACAGTGGATGAGGTTTGGTCTGAGATTCACAAAGGGCAGCAATCTCAGCAGCAGAACAACAACAACAACAACGGTCAGAATACCGAGTCTGTCCCTCGCCAACCTACTTTTGGAGAGATGACTCTGGAGGATTTTCTAGTCAAGGCCGGGGTAGTTCGGGAACAAGGTGCAAATTCAAATGCAATGCCTCTCCAGGTTCCTTCTTCACAACACCAGTTGCTGCAGCAGCAGTTTGGAATGTACCCAAATGTGGGGCCCTCATTTAGGCCCACGATGGCGATTGGTGCTGGCGGTTGGGGAGGGAATGCAATTGCGGTCGCGGTTGCGCCACCTTATCCAGTTGTGGCTCACAGTGGCAGTGGTGGTGCAATTGTGGAGAGTAAAAGAGATGGTGGGTATTCGGTGCCAGGGGTTGGTTATGGAGGGCAGGTGATGAATGGAGGTGGTGGAGGGTATGGGGGTAATATGGGAATTGGCGCGCCGGTGAGCCCAGTTTCGCCAGACGGGATGGGTGGAGGTGAGAACAGTGGTGGTCAATTTGGGATGGAGATGGGTGTGTTGAGGGGACGAAAAAGGGGTTTGGATGGTCCTGTGGAGAAGGTGGTGGAGAGGAGGCAGAGGAGGATGATCAAGAACAGAGAATCAGCAGCCAGATCAAGAGCAAGAAAACAGGCATACACAATTGAATTGGAAGCAGAATTGAATCAATTAAAAGAAGAGAATGCACAGCTGAAACTAGCTCTGGCCGAGCTTGAGAGGAGAAGAAAGCAACAGTATTTAGAGGAAACGAATGGGATGGTTCAAACCAACGCTCAGAAGACCAAGAAGAAACTAAGTTCATTGAGAAGGACTCTAAGTTGCCCTTTTTGA 1311 0.4905 MVCHLENLRQDKVKEKMVVTGSEMNSQGGDGVSNQQEANKNHSSFSSLGRQSSSIYSLTLDEFQHTLCEPGRNFGSMNMDEFINSIWSAEENQATNNNNPNQNNNNINNNNNLSLSETSTEKLGFIRKQPSLPRHGSLTIPAPLCRKTVDEVWSEIHKGQQSQQQNNNNNNGQNTESVPRQPTFGEMTLEDFLVKAGVVREQGANSNAMPLQVPSSQHQLLQQQFGMYPNVGPSFRPTMAIGAGGWGGNAIAVAVAPPYPVVAHSGSGGAIVESKRDGGYSVPGVGYGGQVMNGGGGGYGGNMGIGAPVSPVSPDGMGGGENSGGQFGMEMGVLRGRKRGLDGPVEKVVERRQRRMIKNRESAARSRARKQAYTIELEAELNQLKEENAQLKLALAELERRRKQQYLEETNGMVQTNAQKTKKKLSSLRRTLSCPF* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2490 436 Pfam bZIP transcription factor 351 402 IPR004827 GO:0003700|GO:0006355
Lja5g2490 436 MobiDBLite consensus disorder prediction 93 115 - -
Lja5g2490 436 SUPERFAMILY Leucine zipper domain 351 401 IPR046347 GO:0003700|GO:0006355
Lja5g2490 436 PANTHER ABA RESPONSE ELEMENT-BINDING FACTOR 16 435 IPR029803 GO:0003700|GO:0005634|GO:0009737|GO:0045893
Lja5g2490 436 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 16 435 IPR043452 GO:0003700|GO:0045893
Lja5g2490 436 MobiDBLite consensus disorder prediction 155 181 - -
Lja5g2490 436 MobiDBLite consensus disorder prediction 22 48 - -
Lja5g2490 436 SMART brlzneu 347 411 IPR004827 GO:0003700|GO:0006355
Lja5g2490 436 CDD bZIP_plant_BZIP46 351 405 - -
Lja5g2490 436 Coils Coil 367 408 - -
Lja5g2490 436 MobiDBLite consensus disorder prediction 417 436 - -
Lja5g2490 436 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 354 369 IPR004827 GO:0003700|GO:0006355
Lja5g2490 436 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 349 401 IPR004827 GO:0003700|GO:0006355
Lja5g2490 436 Gene3D - 349 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2490 Lja-Chr5 48862048 48867108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2490 13 405 bZIP Transcription Factor Family AT2G36270 49.660 7.44e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja5g2490 bZIP_1 7.2e-11 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2490 5 48862048 48867108 Lja5g2490 5 48862048 48867108 ECH
Lja1g0709 1 6801570 6804911 Lja5g2490 5 48862048 48867108 PCT