Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2489 ATGACTAGGAAGAAGGTGAAACTTGCCTATATCTCTGATGACACGGCAAGAAAAGCAACCTTCAAGAAAAGGAAGAAGGGTATCATAAAAAAGGCGAGTGAACTCACCATTCTTTGTGGGATTCCTGCATGTGCTATAATTTCAAATCCTTTTGATACTCAAGCTGAAGTTTGGCCAAACCCAGAAGTAGCCAAGCAATTGATTGACAGGTATCAGAATGCATCTGTGATAGATGAGAGCAAGAATGTAAACCAAGAGAGCTTTATCATGCAGAGAATTGCCAAAGCTAAGGACCATCTAAAAAAGCTGCGTAAGGAGAACCGTGAGAAGGAGTTGACCATAAAAATGTTCAAATATACGAAGGAACAAAACTTTCCAGACAACGTAACTGTTGAAGAAGTGAAAGAAATCAATGAGTTGGTCGTGAAAAAACAGAACGAGATTGAAAAAACAGAACGAGATTGA 465 0.3892 MTRKKVKLAYISDDTARKATFKKRKKGIIKKASELTILCGIPACAIISNPFDTQAEVWPNPEVAKQLIDRYQNASVIDESKNVNQESFIMQRIAKAKDHLKKLRKENREKELTIKMFKYTKEQNFPDNVTVEEVKEINELVVKKQNEIEKTERD* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2489 154 Coils Coil 93 113 - -
Lja5g2489 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja5g2489 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja5g2489 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja5g2489 154 PANTHER MADS BOX PROTEIN 2 149 - -
Lja5g2489 154 Coils Coil 134 154 - -
Lja5g2489 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Lja5g2489 154 Gene3D - 13 152 IPR036879 GO:0003677|GO:0046983
Lja5g2489 154 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Lja5g2489 154 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Lja5g2489 154 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2489 Lja-Chr5 48840644 48841108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2489 1 117 MADS-box Gene Family AT5G26630 53.390 6.95e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja5g2489 SRF-TF 9.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2489 - - gmx:100792290 188.734