Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2482 ATGCCAATTTCATCATCACTATCCATTCATCTAACCCCAAACCCTCCCATTCTCCAATTCCAACCCAAACCCAAACCCCAATTCCAATTTCAATTTCCGAAGCGCGTTTCCCTCAGAATCCAAAGCTCCACCAAAACCCAACAAACCCTGCAATTCCTCAAACCGTACCTCGCCTCACAGCACAAACCCATCCTCTATGGCTGGCTCTGCAGCGCAATCTCCGTCTACTCACTCTCCAACCTCCTCTCGAGATTCTCCGCAATCACCACCGCCTCCGTTACAGCCACCGACGCCGCCGCGCTCGGCGGATTCGTGCTTGCTCGCTTGGTCGCCACTTACGCGCAGCACGCGCTTCTCTGGGAAGCTTCTCTCCACGCCGTTTACAACGTTCGCGTTGACGTGTTCGACCGCGTGCTGCAGAGGGAACTCGCGTATTTCGAAGCAAACGACGCCGTTTCCGCTGGCGATATCGCGTATCGAGTTACCGCTGAAGCTTCTGACCTTGCCACTACTCTCTACACTCTTCTTAATACCATAGTACCCAGTACTTTGCAGTTGTCGGCAATGGTAATGCAGATGTTGGCTATAAGTCCTGTCCTTTCGTTGATTTCAGCCACTGTTATTCCTTGCATGGGTCTGGTTGTTGTCTTTCTTGGTCAAGAACTTCGCAAGATATCTAAAGAGTCACATCTTAGCGTTGCTGCTATCTCATCATATCTAAATGAGATGCTGCCAGCAATTCTCTTTGTGAAAGCAAACAATGCAGAGTTGTGTGAGAGTGCCAGATTTAAAAGATTAGCTCTGACGGACTATTCTGCAAAGCTGAACAAGAAAAGGATGAAAGCAATCATTCCTCAGGTTATACAAGCTATTTATTTAGGAGTCCTTTCCATACTTTGCGCTGGTTCACTGGTGATTTCAAGAGGTTCATTTGATCGCCGTAGCCTGATTTCATTCGTGACATCCTTGCTTTTCTTGATTGAGCCCATTCAGGATGTAGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCAGCCGTTGAACGCCTGGTTGCTTTGACCACGTTCAAAAATGAGGTGGTTGAGAAACCAGATGCTGTTCATTTGGACCATGTTACAGGGGACTTGAAATTCTGTGATGTCTCCTTTAAGTATAATGATGACATGCCACATGTTTTAAATGGATTGAATCTTCACATTAAGACTGGAGAGATAGTTGCTATAGTGGGTCCTTCTGGTGGAGGGAAAACAACACTTGTAAAACTGTTGCTCCGGCTTTATGATCCTATATCTGGTTCTATACTGGTTGATAATCGTAATATCCAAAACATCCGGTTGCAAAGTTTAAGAAGACATGTTGGTGTTGTTTCTCAAGATATAACGCTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTTACAACAAAAATCGACATGGAGAGGGTGAATCATGTAGCTCAAACAGCTCATGCAGATGAGTTTATTATAAATCTTCCTGAAGGATACAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGGGGCCAGAGGCAAAGGCTGGCTATTGCAAGGGCTCTCTATCAGAATTCTTCTATATTAATTCTGGATGAGGCAACTTCTTCCTTAGATAGTAAATCTGAGTTATTAGTGAGACAAGCTGTTGAGTGGTTGATGGAAAATCGCACGGTGCTTGTGATCTCCCATCGCTTGGAAACTGTTATGATGGCTAAAAGAGTATTACTTTTGGATAATGGGAAGCTAGAAGAGCTGCCTCATTCAACTATGTTGAACGGGAATATGAATTCATTCCTTTCATCTGGGCTTGTTATTTGA 1845 0.4455 MPISSSLSIHLTPNPPILQFQPKPKPQFQFQFPKRVSLRIQSSTKTQQTLQFLKPYLASQHKPILYGWLCSAISVYSLSNLLSRFSAITTASVTATDAAALGGFVLARLVATYAQHALLWEASLHAVYNVRVDVFDRVLQRELAYFEANDAVSAGDIAYRVTAEASDLATTLYTLLNTIVPSTLQLSAMVMQMLAISPVLSLISATVIPCMGLVVVFLGQELRKISKESHLSVAAISSYLNEMLPAILFVKANNAELCESARFKRLALTDYSAKLNKKRMKAIIPQVIQAIYLGVLSILCAGSLVISRGSFDRRSLISFVTSLLFLIEPIQDVGKAYNEWRQGEPAVERLVALTTFKNEVVEKPDAVHLDHVTGDLKFCDVSFKYNDDMPHVLNGLNLHIKTGEIVAIVGPSGGGKTTLVKLLLRLYDPISGSILVDNRNIQNIRLQSLRRHVGVVSQDITLFSGTVAENIGYRDLTTKIDMERVNHVAQTAHADEFIINLPEGYKTNIGPRGSTLSGGQRQRLAIARALYQNSSILILDEATSSLDSKSELLVRQAVEWLMENRTVLVISHRLETVMMAKRVLLLDNGKLEELPHSTMLNGNMNSFLSSGLVI* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2482 614 ProSitePatterns ABC transporters family signature. 516 530 IPR017871 GO:0005524
Lja5g2482 614 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 376 613 IPR003439 GO:0005524
Lja5g2482 614 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 597 IPR027417 -
Lja5g2482 614 Gene3D - 366 610 IPR027417 -
Lja5g2482 614 Pfam ABC transporter 393 544 IPR003439 GO:0005524
Lja5g2482 614 Gene3D ABC transporter type 1, transmembrane domain 37 359 IPR036640 GO:0005524|GO:0016021
Lja5g2482 614 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 44 604 - -
Lja5g2482 614 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 44 604 IPR039421 -
Lja5g2482 614 SMART AAA_5 402 590 IPR003593 -
Lja5g2482 614 Pfam ABC transporter transmembrane region 73 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g2482 614 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 69 342 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lja5g2482 614 SUPERFAMILY ABC transporter transmembrane region 53 355 IPR036640 GO:0005524|GO:0016021
Lja5g2482 614 CDD ABC_6TM_exporters 98 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2482 Lja-Chr5 48723406 48729203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2482 366 606 Calmodulin-binding Proteins AT2G36910 43.089 1.01e-53 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2482 K02021 - gmx:100788075 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2482 5 48723406 48729203 Lja5g2482 5 48723406 48729203 ECH