Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2465 ATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATCACTCTCGAGGTCGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATTCAAGACAAGGAAGGCATTCCACCGGATCAGCAGCGTCTCATTTTCGCTGGGAAGCAGCTTGAAGATGGAAGAACCTTGGCTGATTACAACATTCAAAAGGAATCCACGCTTCATCTTGTGCTGAGACTTCGTGGGGGTATCATTGAGCCTTCATTGATGGCTTTGGCTCGCAAATACAATCAGGACAAGATGATCTGCCGCAAATGCTATGCTCGTCTGCATCCAAGGGCTGTAAACTGCCGCAAAAAGAAGTGTGGTCACAGTAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAA 387 0.4677 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2465 128 SUPERFAMILY Zn-binding ribosomal proteins 76 127 IPR011332 GO:0006412
Lja5g2465 128 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Lja5g2465 128 PANTHER UBIQUITIN 1 125 - -
Lja5g2465 128 SMART ubq_7 1 72 IPR000626 GO:0005515
Lja5g2465 128 SMART Ribosomal_L40e_3 77 128 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lja5g2465 128 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 1 125 - -
Lja5g2465 128 Gene3D - 1 79 - -
Lja5g2465 128 PRINTS Ubiquitin signature 11 31 IPR019956 -
Lja5g2465 128 PRINTS Ubiquitin signature 32 52 IPR019956 -
Lja5g2465 128 PRINTS Ubiquitin signature 53 74 IPR019956 -
Lja5g2465 128 Pfam Ribosomal L40e family 78 127 IPR001975 GO:0003735|GO:0005840|GO:0006412
Lja5g2465 128 Gene3D - 80 128 IPR038587 -
Lja5g2465 128 CDD Ubl_ubiquitin 1 76 - -
Lja5g2465 128 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Lja5g2465 128 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Lja5g2465 128 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2465 Lja-Chr5 48062605 48064928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2465 1 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 1.02e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2465 K02927 - ini:109157135 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2465 5 48062605 48064928 Lja5g2465 5 48062605 48064928 ECH