Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2459 ATGGAAAGAATGTTGAACTTTGAAACTCAACAAGTCAATCATAACGTGTCATCATCCCAGCAAAAACCATTGACCTCATCATATGGTGACAATAATAAAGATGGTGAACAATCTGCAGTGGTAGCTATCCAGAATGTGGGAGAAGCTCCCCCTACTTCCGGTGAAAACGCCACCCAAGTCCAAGGCCAAAATCATAACGTGTCATCATCCCAGCAAAAACCATTGACATCATCATATGGTGACAATAATAAAGATGGTGAACAATCTGCAGCGGTAGCTATCCAGAATGTGGAAGAAGCTCCTCCTACTTCCGGTGAAAACGCCACCCAAGTCCAAGGCCAAAATCATAACGTGTCATCATCCCAGCAAAAACCATTGACCTCATCATATGGTGACAATAATAAAGATGGTGAACAATCTGCAGCGGTAGCTATCCAGAATGTGGAAGAAGCTCCTCCTACTTCCGGTGATAACGCCACCCAAGTCCAAGGCCCAAATCATAACGTGTCATCATCCCAGCAAAAACCATTGACCTCAATATATGGTGACAATAATAAAGATGGTGAACAATCTGCAGCGGTAGCTATCCAGAATGTGGAAGAAGCTCCTCCTACTTCCGGTGATAACGCCACCCAAGTCCAAGGCCCAAATCAACGGCTCAAAATAAATCATCATACCCGCCATACACAACACCAGATAGAAGTGATGGAAAACTTCTTCAAGGAGTACCATCACCCAAATGAAGAGCAGAGAAGAGAGCTTGGCAATTCGCTTGGGTTAAATTCCACACAAGTAAAATTTTGGTTCCAAAATAAGCGCAGCCAGATGAAGGCTATGTTGGAACGTCATAATAATACTATTTTGATTGCTGAGAATGACAAGCTTCGCATTGAGACTCTAAAGTACAAAGAGGCATTGAATAATCCGAAGTGCGCTAGTCATAGAGGCCAACCTTATGTTGGTACAATGTCCTTTGAAAAGCAGCAGTTGATGATCGAGAATGCTAGACTGAAAGAAGATCTTGAAAAGATAGCAAAAATTGCAGAAAATCTTGCCAAGTCGTCCTTCTCTAACCTGCCACCATCGTCGCCGCCTCAAACATCAATGCCTTTGCACTCTCTTGATGTTGTTAGCTATATTCCGCAATCAAGCATGGTAGAACAAGTTCATGGTGGTAGCAGTGAGCCTCAAATGTCAACTATCAACTCTACTTTTACAGAATCTGAGAAAACTTGCATTGTTAAGCTTGCGGTTGGAGCAATGGAGGAATTTACCAAGATGGCTCATGTTGGAGCGCCTTTATGGATCCCTACATTCCACACTGAGATTCTAAATCAACAAGAATATGTTAGGGCTTTCCCTGCGTTACTTGGTCCAAAACCCTTAGGGTTTAGATCTGAAGCTTCAAGGGAAACTATGATTGTTATCATGAATCCAAGTACCCTCATTGAGATACTTATGAATGTGAATCAATGGTCAGCTATGTTTCACAGTATTGTTACAAGTGCAACAACAACTGAAATCCTATCAATTGGAGTTCCAGGAAACTATGATGGAGCCTTGATAGCGATCTCAGCAAAGTTTCAAGTGTTGTCACATCTTGTGCCAACTCGTGACAACTATTTCTTAAGATATTGTAAGCTTCACCCTGATGGGGCATGGGCGGTGGTTGATATTTCGTTGGACTATATGCGACCTGTTGCTACCTCAAAATGCAGAAGGCGACCCTCTGGTTGTATGGTTCAAGAATTGACAAATGGTTTCTCAAAGGTTACATGGATTGAGCATGTAGAAGTTGAAGACAACGTGGTGCATGATCTCTTCAAAAATCTAGTAAATTCTGGTTTTGCCTTTGGAGCTAGACGGTGGATAGAAACTTTAGAAAGACAGTGCAAACGTATTGCTTGCACAATAACATCAAACATACCACCAGATAACCATAGCGGTATAACTCCTGAAGGAAGAAAAAGCTTGATGAAATTTGCAGAGAAAATTATGCAAAGCTATTGCAACTATGTTGGTGCTTCCCCACCACCACCATATATTTGGACAGTCCACACAACACCACCAACTGCTGCTAATAATGTGAGAGTCATGACCAGAAACCACACTGACGCATTAGGGGCAATTATCGGTCTCTTTATTAGTGTTGCAACTTCTTTCTTGCTTCCGGTTCCTTCCAAGAGCCTCTTTGATTTTCTTCAAAATGTGAACTCAAGAAACCAGTGGGATATCCAGACCAACGGTTTTGTAGTTCAAGAACTGGCACACATAACGTATGGCCATGCTCCTAGTGACTTCGTCTCTTTACTTCAGGCCAATTGTGCAAATTCCAGCAAAAAAACCAAGACCATAGTTCAAGAGGTTTGCACTGACTCTACAGGATCATACTTGGTGTATGCTCCTATTGAAATTGATACCTTGAATTTAATCTTGAGTGGCTGCAATCCAGATTATGGTACCATACAACCCTCTGGCTTTGCCATTCTTCCTGATGGGCTTGGGCTGAGTGGTGGGTCTGTAACTGATGTTGCATCTGGAGGGTGTTTATGCACATTTGCATATCACACATTGATTGAAGGAAATATAACAGAGCTGCCTCCTGACATGGTAACCTATTTGTGCAATTTTATGAAGTGCACAATTGAAAGAATCCAAGCTGCAATGATGCGTGTGAGCACCTGA 2685 0.422 MERMLNFETQQVNHNVSSSQQKPLTSSYGDNNKDGEQSAVVAIQNVGEAPPTSGENATQVQGQNHNVSSSQQKPLTSSYGDNNKDGEQSAAVAIQNVEEAPPTSGENATQVQGQNHNVSSSQQKPLTSSYGDNNKDGEQSAAVAIQNVEEAPPTSGDNATQVQGPNHNVSSSQQKPLTSIYGDNNKDGEQSAAVAIQNVEEAPPTSGDNATQVQGPNQRLKINHHTRHTQHQIEVMENFFKEYHHPNEEQRRELGNSLGLNSTQVKFWFQNKRSQMKAMLERHNNTILIAENDKLRIETLKYKEALNNPKCASHRGQPYVGTMSFEKQQLMIENARLKEDLEKIAKIAENLAKSSFSNLPPSSPPQTSMPLHSLDVVSYIPQSSMVEQVHGGSSEPQMSTINSTFTESEKTCIVKLAVGAMEEFTKMAHVGAPLWIPTFHTEILNQQEYVRAFPALLGPKPLGFRSEASRETMIVIMNPSTLIEILMNVNQWSAMFHSIVTSATTTEILSIGVPGNYDGALIAISAKFQVLSHLVPTRDNYFLRYCKLHPDGAWAVVDISLDYMRPVATSKCRRRPSGCMVQELTNGFSKVTWIEHVEVEDNVVHDLFKNLVNSGFAFGARRWIETLERQCKRIACTITSNIPPDNHSGITPEGRKSLMKFAEKIMQSYCNYVGASPPPPYIWTVHTTPPTAANNVRVMTRNHTDALGAIIGLFISVATSFLLPVPSKSLFDFLQNVNSRNQWDIQTNGFVVQELAHITYGHAPSDFVSLLQANCANSSKKTKTIVQEVCTDSTGSYLVYAPIEIDTLNLILSGCNPDYGTIQPSGFAILPDGLGLSGGSVTDVASGGCLCTFAYHTLIEGNITELPPDMVTYLCNFMKCTIERIQAAMMRVST* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2459 894 MobiDBLite consensus disorder prediction 151 186 - -
Lja5g2459 894 Gene3D - 464 636 IPR023393 -
Lja5g2459 894 MobiDBLite consensus disorder prediction 49 85 - -
Lja5g2459 894 SUPERFAMILY Bet v1-like 651 880 - -
Lja5g2459 894 SUPERFAMILY Homeodomain-like 210 278 IPR009057 -
Lja5g2459 894 Pfam START domain 418 633 IPR002913 GO:0008289
Lja5g2459 894 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 201 890 - -
Lja5g2459 894 Pfam Homeodomain 225 277 IPR001356 GO:0003677
Lja5g2459 894 Gene3D - 208 290 - -
Lja5g2459 894 MobiDBLite consensus disorder prediction 100 136 - -
Lja5g2459 894 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 201 890 IPR042160 -
Lja5g2459 894 CDD START_ArGLABRA2_like 413 631 - -
Lja5g2459 894 SMART START_1 415 633 IPR002913 GO:0008289
Lja5g2459 894 ProSiteProfiles START domain profile. 406 636 IPR002913 GO:0008289
Lja5g2459 894 CDD homeodomain 226 277 IPR001356 GO:0003677
Lja5g2459 894 SMART HOX_1 221 283 IPR001356 GO:0003677
Lja5g2459 894 MobiDBLite consensus disorder prediction 1 85 - -
Lja5g2459 894 Coils Coil 327 354 - -
Lja5g2459 894 ProSiteProfiles 'Homeobox' domain profile. 219 279 IPR001356 GO:0003677
Lja5g2459 894 SUPERFAMILY Bet v1-like 408 634 - -
Lja5g2459 894 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2459 Lja-Chr5 47955399 47959954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2459 212 889 Homeobox Transcription Factor Family AT4G04890 50.287 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lja5g2459 START 4.9e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2459 K09338 - tcc:18597106 681.404