Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2453 ATGTCTACCTCCAGAAGAAAACTCCTTCTAAACTCTGTCTCCGTGAACCTGGGCTGCGGAACCTGCAGAAAACCAAAACTTGATCTCATATTCCACCCAAAACCAAAGCCCAAGAACTCCACCACCTACCCAATACGCAAACTTCATCACCATCATTCATTTTCAGATCATGACTCTGCCACCAGCACCACCACAACCACAAACACCACATTCTCTCCATGCAGCTATGTTGAGTTTGGTGACTATGAGAAATCTTCTAGTTCTTCAAACACCATTAAGGGGCCTGGAAAAGTTGGAAGAAGAAGAAGTGAAAGCGGCGTGGCAGTGGAGAAAGACTCTGATGACCCTTACCTGGATTTCAGGCGTTCCATGCTGCAAATGATATTGGAGAATGAGATATACTCTAAGGATGGTCTCAGGGAGCTTCTAAACTGCTTTCTTCAGCTCAATTCACCGCAACACCATGGAGTTATTGTCAGAGCTTTCACTGATATCTGGAATGGGGTCTTCTCTGTGAGGTCTGGTCCTGTTCACAGAGGCTAG 543 0.4586 MSTSRRKLLLNSVSVNLGCGTCRKPKLDLIFHPKPKPKNSTTYPIRKLHHHHSFSDHDSATSTTTTTNTTFSPCSYVEFGDYEKSSSSSNTIKGPGKVGRRRSESGVAVEKDSDDPYLDFRRSMLQMILENEIYSKDGLRELLNCFLQLNSPQHHGVIVRAFTDIWNGVFSVRSGPVHRG* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2453 180 MobiDBLite consensus disorder prediction 97 111 - -
Lja5g2453 180 PANTHER TRANSCRIPTION REPRESSOR OFP6-LIKE 1 177 - -
Lja5g2453 180 MobiDBLite consensus disorder prediction 81 111 - -
Lja5g2453 180 Pfam Transcriptional repressor, ovate 113 169 IPR006458 -
Lja5g2453 180 ProSiteProfiles OVATE domain profile. 109 168 IPR006458 -
Lja5g2453 180 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 177 IPR038933 GO:0045892
Lja5g2453 180 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 107 167 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2453 Lja-Chr5 47800886 47801428 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lja5g2453 Ovate 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2453 - - gmx:100804319 205.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2453 5 47800886 47801428 Lja5g2453 5 47800886 47801428 ECH