Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2444 ATGGCAGCAGAGTCAATGAAGGGGAGCCACCTTGACGAGGTCAAGCGCATGGTGGCAGAGTACCGGAAGCCGGTGGTCCGGCTGGGCGGAGAGACGCTGACCATAGCTCAGGTGGCTGCTGTTGCAGCACATGACCAGCACCATGGTGTGAGCGTTGAGCTGTGCGAGTCCGCTAGAGCTGGCGTTAAGGCGAGCAGTGACTGGGTGATGAATAGCATGAACAATGGAACTGACAGTTACGGCGTCACCACCGGTTTTGGCGCCACCTCCCATCGCAGAACCAATCAAGGCAATGCTTTGCAGCAAGAACTCATCAGGTTTTTGAATGCCGGAATATTTGGCAATGGTACCGAGTCAAGCCACACGCTGCCACAACCTGCAACTAGAGCAGCAATGCTGGTGAGGATCAACACTCTTCTCCAAGGTTACTCAGGAATTAGATTTGAAATCCTAGAAGCCATCACCAAGCTGCTTAACAACAGCATCACACCATGTTTACCGCTTCGTGGTACCGTCACAGCTTCTGGTGATCTGGTCCCTCTTTCTTACATTGCTGGCTTGCTTACTGGCCGACAAAACTCCAAAGCCGTTGGACCTTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCCAATTGGCTAGCATCGACTCGGGGTTCTTTGAATTGCAGCCTAAGGAAGGGCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGGTTAGCTTCTATTGTTCTCTTTGAGGCTAACATATTGGCTATACTGGCTGAAGTTCTATCAGCTATTTTTGCCGAAGTGATGCAAGGGAAACCTGAATTTACCGACCATTTGACACATAAGCTAAAGCACCACCCTGGACAAATTGAGGCTGCTGCAATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCAGCAAAGAAGTTGCACGAGGTGGATCCCTTGCAAAAGCCAAAACAAGATCGATATGCGCTTAGAACTTCACCTCAGTGGCTTGGTCCTCTTATCGAAGTGATTCGATTCTCAACAAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTTTCCAGAAACAAGGCCTTACATGGTGGTAATTTCCAAGGAACCCCAATAGGAGTTTCCATGGACAACACACGTCTAGCTCTTGCATCAATTGGCAAACTTATGTTTGCTCAGTTCACTGAGCTTGTGGATGATCATTACAACAATGGGTTGCCTTCAAATCTCACTGCTAGTAGAAATCCTAGTTTGGATTATGGTCTCAAGGGAGCAGAAATTGCCATGGCTTCTTATTGCTCTGAGCTCCAATATCTTGCCAATCCAGTCACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTAAACTCCTTGGGTTTGATTTCTTCTAGAAAAACATATGAAGCCATTGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAATACTCGGTGAAGAACACTGTAAGTCAGGTTGCCAAGAGGACTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCAAGGTTTTGTGAAAAAGATTTGCTGAAAGTGGTTGATAGAGAGACTGTATTTGCCTATATTGATGACCCCTGCAGTGCTACATATCCATTGATGCAAAAACTAAGGCAAGTGCTTGTGGATCATGCATTAGTAAATGAAGAAAACGAGAAGAACATGAACACGTCAATCTTTCAAAAGATTGCAACTTTTGAGGATGAGTTAAAGAGTCTCTTGCCAAAGGAGGTCGAAAGTGCAAGGGCTGCATATGAGAGTGGCAATCCAGCAATTCCAAACAAGATCAATGAATGTAGATCTTACCCGCTGTACAAGTTTGTGAGGGAGGGGTTGGGAACTGAGTTGCTAACCGGAGAAAAGGTCCGGTCACCGGGTGAGGAGTGTGACAAACTGTTCACAGCAATATGTGAGGGTAAAATCATTGATCCTCTTCTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCGATTTGTTAA 2067 0.463 MAAESMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAAHDQHHGVSVELCESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTNQGNALQQELIRFLNAGIFGNGTESSHTLPQPATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNSITPCLPLRGTVTASGDLVPLSYIAGLLTGRQNSKAVGPSGEVLNAKEAFQLASIDSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEVDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFTELVDDHYNNGLPSNLTASRNPSLDYGLKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTYEAIEILKLMSSTFLIALCQAIDLRHLEENLKYSVKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDRETVFAYIDDPCSATYPLMQKLRQVLVDHALVNEENEKNMNTSIFQKIATFEDELKSLLPKEVESARAAYESGNPAIPNKINECRSYPLYKFVREGLGTELLTGEKVRSPGEECDKLFTAICEGKIIDPLLECLGEWNGAPLPIC* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2444 688 Gene3D - 501 622 IPR023144 -
Lja5g2444 688 Gene3D - 1 234 IPR024083 -
Lja5g2444 688 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 1 688 - -
Lja5g2444 688 CDD PAL-HAL 31 498 IPR001106 -
Lja5g2444 688 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 2 677 IPR005922 GO:0005737|GO:0006559|GO:0016841
Lja5g2444 688 Pfam Aromatic amino acid lyase 33 502 IPR001106 -
Lja5g2444 688 Gene3D Fumarase/aspartase (Central domain) 235 683 - -
Lja5g2444 688 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 170 186 IPR022313 GO:0016841
Lja5g2444 688 SUPERFAMILY L-aspartase-like 2 688 IPR008948 GO:0003824
Lja5g2444 688 PANTHER HISTIDINE AMMONIA-LYASE 1 688 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2444 Lja-Chr5 47417499 47420059 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2444 2 688 Monolignol Biosynthesis Gene Families AT2G37040 83.406 0.0 1211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2444 K10775 - gmx:100811101 1238.02