Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2443 ATGTCCATAAACTACTACTCCATGGATCTTCCTGAAACAACACTGTTTTGGACTCCTCATCAGCATCATCAACAAATGGAACCACCACCTTCAATCATCCACCAAAACCAGCAACCCACATGGTTCAACCTCAACAACAACCACCAAAACAACGACGAAGAAGATGAAAACGACGACGGCGACGAAACCACCACCACCACAACAACAACAACCGCCACACCGAAAGGAGAAACAGAAAACGACGACGACGACATTAAGGAACCCATGTTCGAGAAGCCGTTAACTCCGAGTGACGTGGGCAAGCTGAACCGCCTCGTCATCCCAAAGCAGCACGCGGAGAAGTACTTCCCCTTAAGCGGCGGCGGCGGTGGTGGTGGTGACTCGGCCGAGTGCAAGGGGCTGTTACTGAGTTTCGAGGACGAGTCAGGGAAGTGCTGGCGGTTCCGTTACTCGTACTGGAACAGCAGCCAGAGCTATGTTCTCACCAAGGGGTGGAGCCGTTACGTGAAGGACAAGCGTCTTGACGCCGGCGACGTCGTTTTGTTCCAGCGCCACCGTGATGATGCGCAGCGGCTCTTCATTGGGTGGAGGAGGCGCAGGCAGGGTGGTGGTGCCGCCGCCGCGGCGCACGTTAGCAGGATGGTGGGACATGGCAAGAGCAGTGGTGATGGGAATGAGGTTGGTGGTGGTGGTGTGGGCGTGGGGTGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTGCGCATCATCATCCTTTGCCATATCAACATGACTGTCTTCATGCAGGTACTAGAGGGTCCCAAGGTGAGAGGCAAAGGACGAGAGCGATGGGGAACATGAGTTCTTCAAGTCCTAGTTCAAGTTCAAGCAGGGTACTTAGGCTTTTTGGAGTGAACATGGAATGCCAAGCTGAACATGATGATTCTGGACCAGAATGCTCCTACAATGGTGACACTGTGCCTATGAACCAGGGCACAGATACCAATCACCATTTTTATCAGTACTCTTCTAATTCTCATTCTAATTCCAACCCTCACATGGTACCTCACCAATCCTACTACTACTAG 1068 0.5253 MSINYYSMDLPETTLFWTPHQHHQQMEPPPSIIHQNQQPTWFNLNNNHQNNDEEDENDDGDETTTTTTTTTATPKGETENDDDDIKEPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLSGGGGGGGDSAECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRDDAQRLFIGWRRRRQGGGAAAAAHVSRMVGHGKSSGDGNEVGGGGVGVGWTRGFYSAHPYPAHHHPLPYQHDCLHAGTRGSQGERQRTRAMGNMSSSSPSSSSSRVLRLFGVNMECQAEHDDSGPECSYNGDTVPMNQGTDTNHHFYQYSSNSHSNSNPHMVPHQSYYY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2443 355 MobiDBLite consensus disorder prediction 324 349 - -
Lja5g2443 355 Pfam B3 DNA binding domain 90 199 IPR003340 GO:0003677
Lja5g2443 355 MobiDBLite consensus disorder prediction 21 94 - -
Lja5g2443 355 MobiDBLite consensus disorder prediction 21 48 - -
Lja5g2443 355 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 34 319 IPR044800 GO:0003700
Lja5g2443 355 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 34 319 - -
Lja5g2443 355 MobiDBLite consensus disorder prediction 76 91 - -
Lja5g2443 355 Gene3D - 79 207 IPR015300 -
Lja5g2443 355 SMART B3_2 90 200 IPR003340 GO:0003677
Lja5g2443 355 ProSiteProfiles B3 DNA-binding domain profile. 90 200 IPR003340 GO:0003677
Lja5g2443 355 MobiDBLite consensus disorder prediction 264 290 - -
Lja5g2443 355 MobiDBLite consensus disorder prediction 267 290 - -
Lja5g2443 355 MobiDBLite consensus disorder prediction 324 355 - -
Lja5g2443 355 CDD B3_DNA 88 190 IPR003340 GO:0003677
Lja5g2443 355 SUPERFAMILY DNA-binding pseudobarrel domain 87 200 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2443 Lja-Chr5 47376085 47378579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2443 83 308 RAV Transcription Factor Family AT5G06250 52.586 7.48e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja5g2443 B3 4.8e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2443 - - aprc:113872948 371.703