Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2438 ATGTCCAGCACCGCTGGAGCTTCTGACAATCGCGCCACGCCACCGCTCCAACCTCCCAACCGCCCACCACTCAAACGCCACCTGGCCTTTGCTTCCACCAAGCCGCCATTTGCTCCGCCCGATGATTACCACACCTTTTCCGCCGCCGCCACGACCGCCGCTGGTCCCGATTCTAGGAGAGGCGCCCATCACGAGCCTGAAGCTGTCGTTGTCAGATCTCCGTTCATAAAGCGGAAGAATGGAATGAATAACAATGAAGGAGACTCACAAAAGTGGGGTAATAGCCCTGGAGGCACTAACGTCATGAATAGTCCTTTTAAAACTCCTGTGTCTGCAAAAGGGGGAAGGACACATAAGTTAAAAGTTTCCAAAGAAGGCAGATCATGTCCTCCAACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTAACAATCGTTATGACAGTTCCTTAGGTCTTTTGACAAGAAAGTTTATCAATTTGATCAAGCATGCAGAGGATGGAATGCTTGACCTAAATAAAGCAGCAGAAACATTGGAGGTGCAAAAAAGGAGGATATATGACATAACTAATGTTTTGGAAGGGATTGGTCTCATCGAAAAGAAGCTCAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACGCCTGGTGCGGTTGATGGTGATATCTCTATGCTAAAGGCAGAAACTGAAAAACTTTCTTCGGAAGAGCAGAGATTGGATGATCAGATAAGGGAAATGCAAGAAAAGCTTAGGAGTTTGAGTGAAAATGAAAACAACCAGAAGTGCCTTTTTGTGACTGAAGAAGATATTAAAGCCGTTCCTTGCTTCCAGAATGAAACTCTGATAGCAATCAAAGCTCCTCATGGAACTACACTGGAAGTCCCTGATCCTGAGGAAGCTGTTGACTATCCACAGCGAAGATATAGAATCATTCTTAGAAGCACGATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGGTGCTGAGCCCCCCATCAGTCTCCCACTTGCTTCAAGTTCAGGTTCCAATGAGCAGCTAGTGACAGAAACGGTTCCTACTGAATTCAGTGGAATAGGACTTGAGCCTCAAGCTCAGCTCTCTTCTCAAGGGTACTCTGATCTGAATGCTTCACAAGAGTTTGCTGGTGGCATGATGAAGATTGTCCCTTCAGATGCTGATAATGATTCAGATTATTGGCTTTTATCAGATGCTGAAGTTAGCATAACAGATATGTGGAAAACAGATGCTAGTGTTGACTGGAATGGAGTGGACATGCTTCATCCTGACTTTGGCTTGGTTTCGAGGCCGCAAACTCCATCATCTGGGTTTGCTGAAGCACCACCCACAGCAGCTAACTCTAATCAGAGGTGA 1413 0.4558 MSSTAGASDNRATPPLQPPNRPPLKRHLAFASTKPPFAPPDDYHTFSAAATTAAGPDSRRGAHHEPEAVVVRSPFIKRKNGMNNNEGDSQKWGNSPGGTNVMNSPFKTPVSAKGGRTHKLKVSKEGRSCPPTPISNAGSPSPLTPANNRYDSSLGLLTRKFINLIKHAEDGMLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTPGAVDGDISMLKAETEKLSSEEQRLDDQIREMQEKLRSLSENENNQKCLFVTEEDIKAVPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAEPPISLPLASSSGSNEQLVTETVPTEFSGIGLEPQAQLSSQGYSDLNASQEFAGGMMKIVPSDADNDSDYWLLSDAEVSITDMWKTDASVDWNGVDMLHPDFGLVSRPQTPSSGFAEAPPTAANSNQR* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2438 470 PANTHER E2F TRANSCRIPTION FACTOR 3-RELATED 21 455 - -
Lja5g2438 470 SMART E2F_TDP_2 149 214 IPR003316 GO:0005667|GO:0006355
Lja5g2438 470 Pfam E2F/DP family winged-helix DNA-binding domain 151 214 IPR003316 GO:0005667|GO:0006355
Lja5g2438 470 Pfam E2F transcription factor CC-MB domain 230 330 IPR032198 GO:0046983
Lja5g2438 470 MobiDBLite consensus disorder prediction 448 470 - -
Lja5g2438 470 MobiDBLite consensus disorder prediction 446 470 - -
Lja5g2438 470 PANTHER TRANSCRIPTION FACTOR E2F 21 455 IPR015633 GO:0000978|GO:0006357
Lja5g2438 470 MobiDBLite consensus disorder prediction 129 146 - -
Lja5g2438 470 MobiDBLite consensus disorder prediction 1 146 - -
Lja5g2438 470 SUPERFAMILY E2F-DP heterodimerization region 227 331 IPR037241 -
Lja5g2438 470 Gene3D - 144 216 IPR036388 -
Lja5g2438 470 SUPERFAMILY "Winged helix" DNA-binding domain 148 212 IPR036390 -
Lja5g2438 470 Coils Coil 227 268 - -
Lja5g2438 470 MobiDBLite consensus disorder prediction 78 107 - -
Lja5g2438 470 Coils Coil 165 185 - -
Lja5g2438 470 Gene3D - 222 331 - -
Lja5g2438 470 MobiDBLite consensus disorder prediction 58 72 - -
Lja5g2438 470 CDD E2F_DD 230 331 IPR032198 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2438 Lja-Chr5 47245485 47250320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2438 19 470 E2F-DP Transcription Factor Family AT2G36010 57.082 5.60e-167 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lja5g2438 E2F_CC-MB 5.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2438 K06620 - gmx:100811762 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2438 5 47245485 47250320 Lja5g2438 5 47245485 47250320 ECH