Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2427 ATGGTGATATTTGTGCAGACCTTGACAGGGAAGACTATTGCCTTGGAGGTGGACAGATCTGAAACAATTGATGATGTGAAGGAAAAGATCCAGTACAATAAAGGCATTCCCCCACACCAGATGCGACTCATTTTTGGTGGGAAGCAATTGGAGGACTATCGTACTTTGGCAGATTACGGTATTCAGAACATGTTTACCCTTAAAAAAAAAAGAATTGGCATGGTGATATTTGTGCAGACCTTGACAGGGAAGACTATTGCCTTGGAGGTGGACAGATCTGAAACAATTGATGATGTGAAGGAAAAGATCCAGTACAATGAGGGCATTCCCCCACACCAGATGCGACTCATTTTTGGTGGGAAGCAATTGGAGGACTATCGTACTTTGGCAGATTACGGTATTCAGAACATGTTTACCCTGTACCTTGTCCTCTCCTTTCGCGGCGGCAGCATCTGA 456 0.443 MVIFVQTLTGKTIALEVDRSETIDDVKEKIQYNKGIPPHQMRLIFGGKQLEDYRTLADYGIQNMFTLKKKRIGMVIFVQTLTGKTIALEVDRSETIDDVKEKIQYNEGIPPHQMRLIFGGKQLEDYRTLADYGIQNMFTLYLVLSFRGGSI* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2427 151 Gene3D - 68 151 - -
Lja5g2427 151 SUPERFAMILY Ubiquitin-like 1 67 IPR029071 -
Lja5g2427 151 ProSiteProfiles Ubiquitin domain profile. 74 149 IPR000626 GO:0005515
Lja5g2427 151 PANTHER - 1 149 - -
Lja5g2427 151 PRINTS Ubiquitin signature 84 104 IPR019956 -
Lja5g2427 151 PRINTS Ubiquitin signature 105 125 IPR019956 -
Lja5g2427 151 PRINTS Ubiquitin signature 126 147 IPR019956 -
Lja5g2427 151 Pfam Ubiquitin family 76 146 IPR000626 GO:0005515
Lja5g2427 151 Pfam Ubiquitin family 3 64 IPR000626 GO:0005515
Lja5g2427 151 Gene3D - 1 67 - -
Lja5g2427 151 SMART ubq_7 1 70 IPR000626 GO:0005515
Lja5g2427 151 SMART ubq_7 74 145 IPR000626 GO:0005515
Lja5g2427 151 SUPERFAMILY Ubiquitin-like 72 149 IPR029071 -
Lja5g2427 151 ProSiteProfiles Ubiquitin domain profile. 1 67 IPR000626 GO:0005515
Lja5g2427 151 PANTHER UBIQUITIN 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2427 Lja-Chr5 46451469 46452907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2427 1 67 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 71.642 2.11e-26 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2427 - K08770 dcr:108227303 192.971