Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2424 ATGGACATACAATCTCAGTCATTACTTACAAGGAGCGGAGTTAATCTTGACTCGCATTTTATACTAGACGCTTGTGAGTATGATAATGGCCGTGCTAGCTCCTCAAGTTGGTCTCTTCCAAATTATCATTTACCAGATTTATTTGGAGGTCGAACAATTCCTTCACAGAATGTTGTAATGCCCACAAGGAGTGGTTCAAGGCATAGACATGTTCATCCTTCACACAATGTTGAGATGCCCACAAGGAGTGGTTCTAGGTATAGGCATGTTCATGTTGGTCCTCCACCATCTCTGTGGTTATCCCATCAAGGATCTTCTAGGCATCAAAATCTTCAACCTAGAGGCTTTCTCCAACTTGGTCACAGCAATGTGCGCATGGAAACTGAACATATGTCTTACGAGGAGCTTCTTGCACTTGGTGAGCGGGTAGGCAGTGTTAGCACAGGCTTATCTGGTGAAACAATTAGAGCTCAAATGAAGATAAAAGACTATGCAGTACCTCAAGCTTCTGAGCAACAAGAAGCTGATTCTTGTGTAATATGTCAGGAAGAATACAGAGAACAAGAGAAAATTGGACTTCTTCGATGTGGGCATGAATTCCACGCAAACTGCTTGGGGAATTGGCTTCTTATAAAGAATATCTGTCCCTTGTGCAAATCAGAAGCACTGGCCATTAGATGA 681 0.4258 MDIQSQSLLTRSGVNLDSHFILDACEYDNGRASSSSWSLPNYHLPDLFGGRTIPSQNVVMPTRSGSRHRHVHPSHNVEMPTRSGSRYRHVHVGPPPSLWLSHQGSSRHQNLQPRGFLQLGHSNVRMETEHMSYEELLALGERVGSVSTGLSGETIRAQMKIKDYAVPQASEQQEADSCVICQEEYREQEKIGLLRCGHEFHANCLGNWLLIKNICPLCKSEALAIR* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2424 226 MobiDBLite consensus disorder prediction 61 85 - -
Lja5g2424 226 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Lja5g2424 226 SMART ring_2 178 218 IPR001841 -
Lja5g2424 226 SUPERFAMILY RING/U-box 172 222 - -
Lja5g2424 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 53 223 IPR045191 GO:0061630
Lja5g2424 226 PANTHER OS04G0185500 PROTEIN 53 223 - -
Lja5g2424 226 Pfam Ring finger domain 176 219 IPR001841 -
Lja5g2424 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 224 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2424 Lja-Chr5 46439614 46440626 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2424 121 223 C3H Transcription Factor Family AT2G15530 52.830 1.09e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2424 K19041 - gmx:100808448 164.466