Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2417 ATGGCAGCCCCGAACTATAGCAACAAACACTATGTTATCTACATGAAAAGAGGAGTTTACAATGAGATTGTTAACATCGGTAAGAATAAGTGGTACTTGAAAATGGTTGGAGATCGTATGGATCTCACTATCATCTCTAGAAGCTTGAGGTACAATCAGAATTTGAGCACATACTACACAGCTACATTTGGTGTCGATGGAAAAGGGTTCATAGCACAACGCATATCCTTCAGGAACACTGCATGGCATGAATATCATCAAGTCGTCGCTGTGAGATCAGTAGCTAACCTTTCTATCTTTGACCAATGTGAGATTTTCGGTTACCAAGACAACCAATATGTCTATTCGCAGTGGCAGTTCTACACAAATTGCAAAATCAGAGGCACATTGGATTTCATATTTGGACACGCCTCTGAGGCTTTTCAATACTGCACTATATTGGTCAAGAAAGGATTGCCAACACAAAAGAACACTATCACGGCCCAAGATAGAACAAGCTCAAGCCTAGCATCAGCATTCTCCTTCCAGTTCTGCAATATATCGGCAGATTTGGACCTTCTACCCTTCGTTTGCTCCATATCCACATACCTTGGAAGACCACGGAAGCAATATTCTAGAGTTGCTGGCATGCAATCCTACATGAGTGATGTGTTGAGTCTTGAAGGATGGTTAGAGTGGAATAGTTCATTGTATTTGGACACATTGTACTACATTGAGTACAATAATTAA 729 0.4074 MAAPNYSNKHYVIYMKRGVYNEIVNIGKNKWYLKMVGDRMDLTIISRSLRYNQNLSTYYTATFGVDGKGFIAQRISFRNTAWHEYHQVVAVRSVANLSIFDQCEIFGYQDNQYVYSQWQFYTNCKIRGTLDFIFGHASEAFQYCTILVKKGLPTQKNTITAQDRTSSSLASAFSFQFCNISADLDLLPFVCSISTYLGRPRKQYSRVAGMQSYMSDVLSLEGWLEWNSSLYLDTLYYIEYNN* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2417 242 PANTHER PECTINESTERASE 2 242 - -
Lja5g2417 242 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 2 242 - -
Lja5g2417 242 SUPERFAMILY Pectin lyase-like 2 242 IPR011050 -
Lja5g2417 242 Pfam Pectinesterase 2 242 IPR000070 GO:0030599|GO:0042545
Lja5g2417 242 ProSitePatterns Pectinesterase signature 2. 126 135 IPR033131 -
Lja5g2417 242 Gene3D - 1 242 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2417 Lja-Chr5 46225541 46226349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2417 3 242 Carbohydrate Esterase AT4G33220 51.667 4.62e-86 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2417 K01051 - gmx:100798620 296.204