Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2411 ATGGCGACGTATTTTCATACAAATTCAGAAATCCAAGGTGGTGCTGACGGCCTTCAAACGTTGTTACTCATGAACCCCGGTGGCTACGTCCAGTACTCCGACACACCGCCGCCACCACCACCGCCACAGCAACACGGCGGAAACTACATGTTCCTCAACTCTGCCGCCGCCGCCAATAGCTCTTTTGTCCAGCAGGGGACCTCTCACGCGCCACAGCAATTTGTGGGAGTCCCGCTGTCGGCGGCCTCGGTAGAACCGCCGGTGCAGGCCCACCACGAAGTCTCCGCCCTGCATGGCTTCCCTCACCGCATGCAGTACAATCCTTGGAACGGGGCAGACCAGAACGCGGCGGCGCGTGAGGCTTCACGCGCCTCTCAGGGCTTGTCCTTGAGCCTGCAGTCTCAGGCTCCGGACGCTGACGCGCGTGTGTCAGGTGGCGGCTCGTCGTCCACTGCTTCCGGTGTCACTAACGGCGGCGTGTCGGGGATTCAGAGCGTGCTGTTTGGTTCCAAGTTTTTGAAGGCCACACATGAACTGTTAGAGGAAGTTGTTAATGTTAACGGCGGAATTAAGGTTGACTCGGCGAAGAAGAAGGTTGTTGGAGAATCGTCAACTGCAGGTAGTGGAGATGGTTCAGTTGGTGGAGATCAGGGCAGTCTGAAGCGTAGCTCTGAGTTGTTATCAACCACAGAGAGACAAGAAATTCAGATGAAGAAGGCAAAGCTAATCAACATGCTTGATGAGGTGGAGCAGAGGTACAGACAATACCACAACCAGATGCAGGTTGTGATTTCCATGTTTGAACAAGTTGCGGGGATGGGTTCCGCGAGAACCTACACTGCTCTTGCACTGCAAACAATCTCGAAGCAGTTTCGATGCTTGAAAGATGCTATCACAGGTCAAATTAGAGCTGCAAATAAAAGCTTAGGAGAAGAAGATTGCTTTGGAGGTAAAATTGAAGGGTCTAGGCTCAAGTATGTGGATCATCACCTTCGGCAACAGAGAGCTATTCAACAGTTAGGAATGATGAATCACAACGCTTGGAGACCCCAGAGAGGATTGCCAGAACGATCAGTTTCCGTCCTCCGAGCTTGGCTTTTCGAACACTTCCTCCACCCTTATCCCAAGGATTCAGACAAGCACATGCTTGCAAAACAAACTGGGCTTACCAGGAGCCAGGTTTCAAATTGGTTCATAAACGCTCGAGTTCGGCTATGGAAGCCTATGGTGGAAGAAATGTACGTAGAAGAGATGAAGGAGAATGAACGGAATGAGTCAGAGGACAAAACAAGCAAGAGCGGTGAAGAGTCCCCTGCAATGAAAATACAAGAGAGAGGTCCTGCATCTGAAACTGAATCTAAAAGTTTCAATTCAAACCAAGATGTTGCTAAAAACCAAAACACTCCTATAGTTTCAGTGTCAACACCATCAACATCACCTGTTGGGGGAAATGTGAGAAACCAATCAGCATTTAGTTTCATGCAAGAACTTGATGGACTTACACAAGGAAGTCCCAAGAGAACAAGGAACCATGAAATTCTTATGTCTCCAAATCGTGTCTCTTCAATCAACATGGATATCAAAAGCAACGAGACAAACAATGAAGCACTCTCAAGAGATGGGTACTCATTTATAGGAAACCAAACAAACTTCATAGGAGGGTTCGGACAGTACCCAATGGAAGAAATTGGGAGGTTTGATGCAGAGCAATTCACACCAAGGTTTTCAGGTAATGGAGTTTCCCTCACTCTTGGTCTTCCTCATTGTGAAACCATATCAGGAACTCATCATCAAACGTTTATCCCAAACCAAAACATTCCTATAGGAAGACGATTGGACATTAGTGAACCAAACGAGTTTGGTGCCATGAACACTTCAAATTCTCACTCTTCAGCTGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGATTTTGTGGCCTAA 1968 0.4802 MATYFHTNSEIQGGADGLQTLLLMNPGGYVQYSDTPPPPPPPQQHGGNYMFLNSAAAANSSFVQQGTSHAPQQFVGVPLSAASVEPPVQAHHEVSALHGFPHRMQYNPWNGADQNAAAREASRASQGLSLSLQSQAPDADARVSGGGSSSTASGVTNGGVSGIQSVLFGSKFLKATHELLEEVVNVNGGIKVDSAKKKVVGESSTAGSGDGSVGGDQGSLKRSSELLSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQVVISMFEQVAGMGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDCFGGKIEGSRLKYVDHHLRQQRAIQQLGMMNHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYVEEMKENERNESEDKTSKSGEESPAMKIQERGPASETESKSFNSNQDVAKNQNTPIVSVSTPSTSPVGGNVRNQSAFSFMQELDGLTQGSPKRTRNHEILMSPNRVSSINMDIKSNETNNEALSRDGYSFIGNQTNFIGGFGQYPMEEIGRFDAEQFTPRFSGNGVSLTLGLPHCETISGTHHQTFIPNQNIPIGRRLDISEPNEFGAMNTSNSHSSAAFESINMQNPKRFAAQLLPDFVA* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2411 655 MobiDBLite consensus disorder prediction 205 231 - -
Lja5g2411 655 Gene3D - 351 431 - -
Lja5g2411 655 SMART prehox3 161 300 IPR006563 -
Lja5g2411 655 MobiDBLite consensus disorder prediction 198 231 - -
Lja5g2411 655 Pfam Homeobox KN domain 365 404 IPR008422 GO:0003677|GO:0006355
Lja5g2411 655 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 1 8 598 - -
Lja5g2411 655 MobiDBLite consensus disorder prediction 115 156 - -
Lja5g2411 655 Pfam Associated with HOX 166 299 IPR006563 -
Lja5g2411 655 SUPERFAMILY Homeodomain-like 349 415 IPR009057 -
Lja5g2411 655 SMART HOX_1 348 412 IPR001356 GO:0003677
Lja5g2411 655 MobiDBLite consensus disorder prediction 417 486 - -
Lja5g2411 655 ProSiteProfiles 'Homeobox' domain profile. 345 408 IPR001356 GO:0003677
Lja5g2411 655 MobiDBLite consensus disorder prediction 449 486 - -
Lja5g2411 655 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 598 - -
Lja5g2411 655 CDD homeodomain 348 409 IPR001356 GO:0003677
Lja5g2411 655 Coils Coil 232 259 - -
Lja5g2411 655 MobiDBLite consensus disorder prediction 119 156 - -
Lja5g2411 655 MobiDBLite consensus disorder prediction 417 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2411 Lja-Chr5 46051621 46054490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2411 1 655 Homeobox Transcription Factor Family AT2G35940 50.607 3.64e-176 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lja5g2411 POX 2.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2411 - - gmx:100810851 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2411 5 46051621 46054490 Lja5g2411 5 46051621 46054490 ECH
Lja1g0635 1 5859955 5863607 Lja5g2411 5 46051621 46054490 PCT