Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2407 ATGGACAATGAAGTTGAAGTTCCTCAGTATTTCATCTGCCCCATATCGCTGCAAATCATGAAAGACCCTGTAACTGCCATAACTGGAATCACATACGACCGAGACAGCATCGAGCAGTGGCTAATCTCCAACAAGAACCACCACCACGCGACGTGCCCCGTCACAAAGCAGCCTCTCCCAAGAGACTTTGATTTAACGCCGAATCACACGCTCCGCCGCTTGATCCAAGGTTGGTGCACCCTAAACGCCGCCCTCGGCATTGATCGGATTCCAACCCCGAAGTCACCGCTTAATAAGACCCAAGTCCTCAAGCTTCTCAAAGACCTCAAGGATGAACGGGAACCCAGAGACCCAAATCTTCAACACAAAACTCTCATGCAACTGGAGCTCCTCGCAGCACAGAGCGAGAGGAACAGAAAGTGTTTAGTAGAATCTGGTGTGCCAAAGGCTGTGCTCATGTTCATAGTGTCTTGTTTCAGAAAAGGCCAAATCAAAGAGGGTCTTGAAGAAGCTCTGAGTTTATTGCAGTTTGTTAAGGTCCCCACAGAGGAGGCTATGCTGATTTTATCAGAAGATGATCATCAAATATTGGATTCTCTAACATGGGTTTTAGCTTTACCTTCTGATCAAATAAGAAACTCAATTGCAGTGAAATCACATGCAGTTTTAGCTCTCAAAAAACTAGTCCACAAGGGTGGTCCTGGTGTTCTTGAAAGGTTAAACTTAGAATTCTTTGAAAGGATTGTGAAGATTTTGCGAAATGGCGCTATAACTCAACAAGGAACCCGTGCTTCTCTTCAAGTCATGTTAAGCGCTTGTCCTTGGGGAAGAAACAGGTTCATGATGGTGGAAGCCGGTGCAGTTTTCAATCTCATAGAGATCGAATTAACTGCACCGGAAAAGAAAATTACAGAGCTTGTAGTAACTATACTTTTTCATTTGTGCACTTGTGCGGATGGGAGGGCTCAGTTTCTGAGCCACGAAGGGTCTATTGCGGTGGTGACAGAGAGATTGTTGAAGGTTTCCGCTGCGGTGGATGATAAAGTTATGTTTGTTTTGGCGTTAGTGTCGCAATTCTCCGCGACGAACGGGGTGTTGCAGGAGATGTTAAGGGTTGGGACAGTGTCCAAGCTTTTCATGTTGCTTCAGGGTGATCATGCTAAGTATTTGAAAGATAAAGCGATGGAGATAATCAGGGCCCACTCGAAGGTTTGGAAGAATTCTCCTTGCTTTCCTGATCCCTCTTCTTATGCAAGCTTGAATGTATAG 1269 0.4539 MDNEVEVPQYFICPISLQIMKDPVTAITGITYDRDSIEQWLISNKNHHHATCPVTKQPLPRDFDLTPNHTLRRLIQGWCTLNAALGIDRIPTPKSPLNKTQVLKLLKDLKDEREPRDPNLQHKTLMQLELLAAQSERNRKCLVESGVPKAVLMFIVSCFRKGQIKEGLEEALSLLQFVKVPTEEAMLILSEDDHQILDSLTWVLALPSDQIRNSIAVKSHAVLALKKLVHKGGPGVLERLNLEFFERIVKILRNGAITQQGTRASLQVMLSACPWGRNRFMMVEAGAVFNLIEIELTAPEKKITELVVTILFHLCTCADGRAQFLSHEGSIAVVTERLLKVSAAVDDKVMFVLALVSQFSATNGVLQEMLRVGTVSKLFMLLQGDHAKYLKDKAMEIIRAHSKVWKNSPCFPDPSSYASLNV* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2407 422 Pfam U-box domain 7 80 IPR003613 GO:0004842|GO:0016567
Lja5g2407 422 SUPERFAMILY ARM repeat 104 398 IPR016024 -
Lja5g2407 422 PANTHER WDSAM1 PROTEIN 4 413 IPR045185 GO:0061630
Lja5g2407 422 SUPERFAMILY RING/U-box 4 86 - -
Lja5g2407 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Lja5g2407 422 ProSiteProfiles U-box domain profile. 6 85 IPR003613 GO:0004842|GO:0016567
Lja5g2407 422 SMART Ubox_2 10 78 IPR003613 GO:0004842|GO:0016567
Lja5g2407 422 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 4 413 - -
Lja5g2407 422 CDD RING-Ubox_PUB 11 57 IPR045210 -
Lja5g2407 422 Gene3D - 91 407 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2407 Lja-Chr5 45887979 45891611 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2407 2 411 U-box Gene Family AT3G11840 40.312 5.40e-108 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2407 - - lja:Lj0g3v0014579.1 823.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2407 5 45887979 45891611 Lja5g2407 5 45887979 45891611 ECH
Lja1g0633 1 5833680 5835324 Lja5g2407 5 45887979 45891611 PCT