Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2406 ATGGACGAGATTGAAGTGCCTCCATTCTTCCTCTGCCCAATTTCCTTAGAAATCATGAAGGACCCCGTCACAATCTCCACCGGAATCACCTACGACCGAGACAGCATCGAGAAATGGCTCTTCTCAGAGAACAACAAAACCTGCCCGGTCACCAAACAGGCCCTAAATCTCTCCGATTCAACCGGTCCCACGCCGAACCACACGCTCCGGAGACTCATCCAAGCGTGGTGCACAATCAACTCCTCTCACGGAGTCGAAAGGATCCCAACTCCAAAGCCTCCAGTGTCAAAAACCGCAATAAAAAAGCTTCTCATAGACGCTTCTCATTCAGACTCTCCTCAGTTGCAGATCCAATCTCTCGGAAGGCTCAAATCCATCGCTTCTGAGAGCGAAACCAACAGACGCTGCATTGAATCCGCTGGCGCGGTCGAGTGCTTAGCGTCTGTTGTAACAACCAGAACCAATTCTTTATCTTTAGATGATGAAATTGAAGGGTTTGACTTAAAATCAGGTCCTGCAGATGAAGCTTTGAGCATCCTCTTCACTCTTAATTTACAAGAATCAGGTTTGAAAACCCTCTTTAGCTACCAAAATGGTGAATTTGTACTCTCCTTGACGAGGATCATGCAGAAAGGACTCTACGAGTCGCGAACTTACGCAGTTTTGTTGCTGAAATCGATGTCTGAAGTGGCTGATTCAGCGAAGATAGCGAATCTGAGAGGTGAGTTGTTTGTGGAATTGGTACAAGTCTTGAAAGATCAGGTTTCCCTGAAGGCTTCCAAGGCGACGCTGAAGACGCTGATTCAGCTGGTTCCGTTCGGGAGGAACAGGATCAAAGCAGTGGAAGCTGGGGCGGTACCTGTTCTGGTCGAGCTTCTTCTGGATTGCAAGGACAGGAAGCCTTGTGAGATGATGATGGTGCTTTTGGAGATTTTATGTCAGTGCGCGGACGGGCGCGCGGAGCTTTTAAGCCATGGAGCGGGGCTAGCCATCGTGTCCAAGAAGATTCTCAGGGTTTCCACAATGGCGAACGATAGGGCTGTTAGGATTCTGCTATCGGTTTCACGATTCTCTGCGAAACCGAGTGTTTTGCAAGAGATGGTGCAGTTTGGGGTGGTGGCCAAACTGTGTTTGGTGCTTCAAGTGGATAGTGGCAACAAGGCCAAGGAGAAAGCAAGGGAGATACTCAAATTGCATGCTCGTGTTTGGAGAAACTCTCCTTGCATACCTAGCAATCTGCTTGCTTCATATCCAACAAGTGAGTGA 1266 0.4858 MDEIEVPPFFLCPISLEIMKDPVTISTGITYDRDSIEKWLFSENNKTCPVTKQALNLSDSTGPTPNHTLRRLIQAWCTINSSHGVERIPTPKPPVSKTAIKKLLIDASHSDSPQLQIQSLGRLKSIASESETNRRCIESAGAVECLASVVTTRTNSLSLDDEIEGFDLKSGPADEALSILFTLNLQESGLKTLFSYQNGEFVLSLTRIMQKGLYESRTYAVLLLKSMSEVADSAKIANLRGELFVELVQVLKDQVSLKASKATLKTLIQLVPFGRNRIKAVEAGAVPVLVELLLDCKDRKPCEMMMVLLEILCQCADGRAELLSHGAGLAIVSKKILRVSTMANDRAVRILLSVSRFSAKPSVLQEMVQFGVVAKLCLVLQVDSGNKAKEKAREILKLHARVWRNSPCIPSNLLASYPTSE* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2406 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Lja5g2406 421 Gene3D - 84 407 IPR011989 -
Lja5g2406 421 SUPERFAMILY RING/U-box 3 85 - -
Lja5g2406 421 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Lja5g2406 421 SMART Ubox_2 9 76 IPR003613 GO:0004842|GO:0016567
Lja5g2406 421 ProSiteProfiles U-box domain profile. 5 83 IPR003613 GO:0004842|GO:0016567
Lja5g2406 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 418 - -
Lja5g2406 421 SUPERFAMILY ARM repeat 102 404 IPR016024 -
Lja5g2406 421 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lja5g2406 421 PANTHER WDSAM1 PROTEIN 1 418 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2406 Lja-Chr5 45840720 45842620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2406 2 418 U-box Gene Family AT2G35930 55.819 2.87e-167 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2406 - - gmx:100809123 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2406 5 45840720 45842620 Lja5g2406 5 45840720 45842620 ECH
Lja5g2406 5 45840720 45842620 Lja1g0633 1 5833680 5835324 PCT