Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2402 ATGAACGACTTATTCTCCTCCGGCTCATTCTCTCGCTTCCGCGGCGACCAAGCCTCGCCGGACCGCCACCACGTCATCGAGATGACAGCCGCCACAGGCGGCGGCGACGGCGGATCCGGAAGAGTCAATCTGGACAAATTCTTCGTGGACGTGGAGGCCGTCAAGGAGGAGCTAAGCGAGCTCGACGCGCTAGCGCAGAGGCTTCAGAGCAGCCATGAACAGAGCAAAACCTTGCACAACGCGAAAAGCGTGAAGGAGCTTCGTTCTCGCATGGACGACGACGTTTCGGCTGCCCTGAAGAAAGCGAAGATGGTGAAGCTGAAGCTTGAGGCTCTGGAGCGGTCAAACGCCGCGAACCGGAACTTGCCTGGTTGCGGACCCGGTTCGTCTTCGGACCGGACCCGGAACTCCGTGGTCAACGGGTTGAAGAAGAAGTTGAAGGACTCCATGGATGTTTTCAACCGCCTCCGTGAAGTTATCTCTTCGGAGTATAGGGATACCGTTCAACGCCGTTACTTCACCGTCACCGGCGAGAATCCTGATGAAAAAACGCTTGATCGCTTGATCTCTACCGGTGAGAGCGAGACCTTTCTTCAGAAGGCTATTCAAGAACAAGGAAGGGGTAGAATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGATAGAGAAGAATCTCATGCAGCTGCACCAAGTGTTCCTTGACATGACAGTGCTGGTGCAATATCAAGGTGAGCAGTTGGATAACATTGAGAGCCATGTGAACAGAGCTAGCTCCTTTGTGCACACTGGAACTGAGCAGTTACAGACAGCGCGGAAGCATCAGAAAAACACCAGGAAATGGACCTGTTTCTGTATTTTGCTTCTTCTTGTGATCATCTTGGTTGTGGTGCTTGTCACTGTGAAACCGTGGGAAAGTAATGGCAGTGGCGGCAACAATGGTGGTAGTCAGCCAGCACCAGCACAAACAACTCCATCTCCTCCTCCTCCTCCTTCCGCTTAA 1017 0.529 MNDLFSSGSFSRFRGDQASPDRHHVIEMTAATGGGDGGSGRVNLDKFFVDVEAVKEELSELDALAQRLQSSHEQSKTLHNAKSVKELRSRMDDDVSAALKKAKMVKLKLEALERSNAANRNLPGCGPGSSSDRTRNSVVNGLKKKLKDSMDVFNRLREVISSEYRDTVQRRYFTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKEIEKNLMQLHQVFLDMTVLVQYQGEQLDNIESHVNRASSFVHTGTEQLQTARKHQKNTRKWTCFCILLLLVIILVVVLVTVKPWESNGSGGNNGGSQPAPAQTTPSPPPPPSA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2402 338 Pfam Syntaxin 46 249 IPR006011 GO:0016020
Lja5g2402 338 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 12 314 - -
Lja5g2402 338 SMART SynN_4 39 165 IPR006011 GO:0016020
Lja5g2402 338 Gene3D - 211 307 - -
Lja5g2402 338 PANTHER SYNTAXIN 12 314 IPR045242 -
Lja5g2402 338 CDD SynN 44 201 IPR006011 GO:0016020
Lja5g2402 338 SMART tSNARE_6 209 276 IPR000727 -
Lja5g2402 338 SUPERFAMILY t-snare proteins 43 269 IPR010989 GO:0016020|GO:0016192
Lja5g2402 338 Gene3D - 42 174 - -
Lja5g2402 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 214 276 IPR000727 -
Lja5g2402 338 Coils Coil 51 74 - -
Lja5g2402 338 MobiDBLite consensus disorder prediction 1 22 - -
Lja5g2402 338 MobiDBLite consensus disorder prediction 312 338 - -
Lja5g2402 338 CDD SNARE_syntaxin1-like 213 275 - -
Lja5g2402 338 Pfam SNARE domain 250 302 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2402 Lja-Chr5 45735538 45738227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2402 37 338 SNARE and Associated Proteins AT3G11820 73.770 3.41e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2402 K08486 - gmx:100809258 480.33