Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja5g2401 | ATGAACGACTTGTTTTCCAGCTTCCGGAACACGGACCAAGTCTCACCGGATAGCCACAACCATGTGATCGAGATGGCAGCTGCAGCCGCATCTGATGGCGGTGTGAACCTGGACAAATTCTTCGAGGAAGTCGAAGGAGTCAAGGATGAGCTGAAGGAGCTGGAGCGTCTCTACGAGAATCTCAGATCGTCCCACGAGAAGAGCAAGACCCTTCACAGCGCGAAGGCTGTGAAGGATCTTCGCGCGCGGATGGATGCTGACGTGGCGCTCGCTCTTAAGAAAGCGAAGCTCATTAAGCTGCGGCTCGAGGCGCTTGACCGGTCCAACGAGGCCAGCCGAAGCTTGCCTGGAGCTGGACCGGGTTCATCCTCGGACCGGACTAGGACTTCAGTTGTAAGTGGGTTGAGGAAGAAGCTGAAGGACTCCATGGACAGCTTCAATAGCCTCAGACAACAGATTTCTTCTGAGTACAGGGACACCGTGCAACGTAGATACTACACCGTTACCGGAGAGAATCCTGATGAGAAAACCATTGATCTCCTCATCTCCACTGGTGAAAGTGAAACATTCTTGCAGAAAGCCATCCAACAACAAGGTAGAGCCACCATTATGGACACAATCCAAGAGATTCAAGAGAGGCATGACTCGGTGAAAGAGATAGAGAGGCACCTCAACGAGCTGCACCAAGTTTTCATGGACATGGCAGTGCTAGTCCAATCCCAGGGTGAGCAACTAGACGACATCGAGAGCCACGTGGCGCGAGCTAACTCGTATGTGAGGGGCGGGGTCCAGCAGTTGACTATTGCTAGGAAGCACCAGAAGAATACCCGAAAATGGACCTGCATTGCGATTATATTGTTGCTGATTATCATCTTGATTATAGTCCTGCCTATTGTCCTTAAAAATTGA | 909 | 0.5127 | MNDLFSSFRNTDQVSPDSHNHVIEMAAAAASDGGVNLDKFFEEVEGVKDELKELERLYENLRSSHEKSKTLHSAKAVKDLRARMDADVALALKKAKLIKLRLEALDRSNEASRSLPGAGPGSSSDRTRTSVVSGLRKKLKDSMDSFNSLRQQISSEYRDTVQRRYYTVTGENPDEKTIDLLISTGESETFLQKAIQQQGRATIMDTIQEIQERHDSVKEIERHLNELHQVFMDMAVLVQSQGEQLDDIESHVARANSYVRGGVQQLTIARKHQKNTRKWTCIAIILLLIIILIIVLPIVLKN* | 303 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja5g2401 | 302 | Gene3D | - | 35 | 167 | - | - | |
| Lja5g2401 | 302 | PANTHER | SYNTAXIN | 13 | 297 | IPR045242 | - | |
| Lja5g2401 | 302 | MobiDBLite | consensus disorder prediction | 109 | 131 | - | - | |
| Lja5g2401 | 302 | CDD | SynN | 37 | 194 | IPR006011 | GO:0016020 | |
| Lja5g2401 | 302 | Gene3D | - | 196 | 300 | - | - | |
| Lja5g2401 | 302 | SMART | SynN_4 | 32 | 158 | IPR006011 | GO:0016020 | |
| Lja5g2401 | 302 | Coils | Coil | 37 | 71 | - | - | |
| Lja5g2401 | 302 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 207 | 269 | IPR000727 | - | |
| Lja5g2401 | 302 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 13 | 297 | - | - | |
| Lja5g2401 | 302 | Pfam | SNARE domain | 243 | 295 | IPR000727 | - | |
| Lja5g2401 | 302 | CDD | SNARE_syntaxin1-like | 206 | 266 | - | - | |
| Lja5g2401 | 302 | Pfam | Syntaxin | 39 | 242 | IPR006011 | GO:0016020 | |
| Lja5g2401 | 302 | ProSitePatterns | Syntaxin / epimorphin family signature. | 213 | 252 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Lja5g2401 | 302 | MobiDBLite | consensus disorder prediction | 115 | 130 | - | - | |
| Lja5g2401 | 302 | SUPERFAMILY | t-snare proteins | 35 | 262 | IPR010989 | GO:0016020|GO:0016192 | |
| Lja5g2401 | 302 | SMART | tSNARE_6 | 202 | 269 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja5g2401 | Lja-Chr5 | 45731577 | 45734125 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja5g2401 | 25 | 281 | SNARE and Associated Proteins | AT3G11820 | 75.486 | 2.87e-145 | 409 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja5g2401 | K08486 | - | gmx:100793347 | 459.144 |