Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2400 ATGGCTGCCACAGCTACTCCTTCCTTCCCTATCTGCAAACAACTCTATTTCACTCCTTCTTCCATTCCACTCACCCTTAACATCCCACACAGACCCAAACCCCCAAAACCCCTCAACCTTAAACCCAAGCTCTTCAGCCCTTCTTCTCTCTCACTCTACCGTTTCCACCTACCTTCAGTGTCGTTTCATGGATTCCAAGAGACTGAAGAAGAACCTGAATCTGAAACCTTCCAAAATTCAGAGCCAAAGGTGTCACACTCAAACCAATCAAGGAGGCTCTTTGTGGGAAACTTGCCTTACTCATTGTCTTCCTCTCAGTTGGCTCAGCTCTTCGGAGAGGCTGGTGATGTTGTCTCTGTGGAGGTTGTGTGCGATGACTTTACGGATAGAAGCAGAGGATTTGCGTTTGTTACGATGGGGAGTGTGGAGAATGCTGAACAAGCAATTCAAATGTTTGATGGCACTCAAGTTGGAGGTAGGAATATTAAGGTAAACTTCCCTGAAGTTCCAAAAGGAGGCAAAAAGCGAATGACGGGTTCAAACTATAGTGTCTACGTAGATAGCCCTCATAAGATCTATGCTGGAAACCTTGGCTGGGGTCTGGCTTCCCAGGGCCTTAGAGACGCTTTTGCTGAGCAGCCGGGCTTCCTGAGTGCCAAGGTCATCTATGAAAGGAACAATGGAAAATCTCGAGGATTTGGGTTTGTCTCTTTTGAAACTGCTAAAGATGTAGAGGCTGCTTTAAATGCTATGAATGGTGTGGAGGTTCAAGGCAGGCCCTTACGACTCAATCTGGCTGCAGATAAGAAGCCTATATCTCCTTTTGTAATTGATGAAATGGAAGAGAGTAACGTTGATAGGTTGGAAATCCTGTTTGGTGTCAGCACATGA 891 0.4602 MAATATPSFPICKQLYFTPSSIPLTLNIPHRPKPPKPLNLKPKLFSPSSLSLYRFHLPSVSFHGFQETEEEPESETFQNSEPKVSHSNQSRRLFVGNLPYSLSSSQLAQLFGEAGDVVSVEVVCDDFTDRSRGFAFVTMGSVENAEQAIQMFDGTQVGGRNIKVNFPEVPKGGKKRMTGSNYSVYVDSPHKIYAGNLGWGLASQGLRDAFAEQPGFLSAKVIYERNNGKSRGFGFVSFETAKDVEAALNAMNGVEVQGRPLRLNLAADKKPISPFVIDEMEESNVDRLEILFGVST* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2400 296 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 277 - -
Lja5g2400 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 262 IPR000504 GO:0003723
Lja5g2400 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 163 IPR000504 GO:0003723
Lja5g2400 296 MobiDBLite consensus disorder prediction 65 88 - -
Lja5g2400 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 169 IPR000504 GO:0003723
Lja5g2400 296 PANTHER OS02G0815200 PROTEIN 1 277 - -
Lja5g2400 296 SMART rrm2_1 92 165 IPR003954 GO:0003676
Lja5g2400 296 Gene3D - 63 176 IPR012677 -
Lja5g2400 296 SMART rrm1_1 92 165 IPR000504 GO:0003723
Lja5g2400 296 SMART rrm1_1 191 264 IPR000504 GO:0003723
Lja5g2400 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 268 IPR000504 GO:0003723
Lja5g2400 296 CDD RRM_HP0827_like 92 168 - -
Lja5g2400 296 Gene3D - 177 273 IPR012677 -
Lja5g2400 296 SUPERFAMILY RNA-binding domain, RBD 89 269 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2400 Lja-Chr5 45726149 45730129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2400 90 292 Eukaryotic Initiation Factors Gene Family AT3G16380 30.769 1.76e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2400 - - gmx:100789843 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2400 5 45726149 45730129 Lja5g2400 5 45726149 45730129 ECH
Lja1g0629 1 5794039 5796166 Lja5g2400 5 45726149 45730129 PCT