Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2397 ATGGCGATGCAAACTGTTTATCTGAAAGAACATGAAAGAATGGGCCACAGTTCTGTTGGACAGTTGTCATCTGTGACTTCAGCACCATGGTGGGGGTCTCAATCAGTTTATGGAGACTCTTGTGGTCAGATCAAACCCTTTTCATTGGAGTTTTCCAACTACGTGGACCACTTTGCTGCCAATAAGAACTCAGTACGAGGAGCTGAGCAATTGTTTGATAAAGGACTTACAACCCAGTTTACTATCTTTTCAGATGATTGTAAAATGTCAGGTGAAGCACAAAACCTTGAGGCAACCTTATCACTGCAGCCATCAGTCACCGTTGCTGAGCCGCGTAACCGTTTCGAGCTCGGGTTCAATCAGCCTATGATCTGTGCAAAATATCCTTACATGGATCAATTTTACGGGCTCTTCTCAGCTTATGGACCTCAAATTCCGGGACGTATGATGCTTCCACTTAACTTGTCAACTGACGATGGACCGATTTACGTGAATGCTAAGCAGTACCATGGCATTATCAGACGCAGGCAATCACGTGCAAAAGCTGTGCAAGAAAATAAATTGATCAAACGTAGCAAGCCATATATGCACGAATCGCGCCATCTACATGCAATGCGCCGGCCAAGGGGATGTGGTGGTCGGTTCTTGAACACAAGAAACTCTTCTGATGGAAATGGTAAAAGTGGAAGTGAACTGCATAAGAAAACTGGTGGCCTTGGCCGACATATGCAGTCCAGTGCCTCTCAGAGTTCTGAAGTCTTGCAATCTGAAGTTGGAACTTTAAACTCATCAAAGGAGACAAATGGAAGCAGTCCAAACATCTCAGGGTCAGAGGTGACCAGCATGTATTCACTGGGGGGTCTTGACAGCTTCGCTGTCAATCATCTTGGATCTGCCATCCACCACTCTCTGGCGGACATGATCGATGGTGGGCATGGTATCATTATGCCCACAAAATGGGTTGGAGCAGCAGGAAGCTGCTTCAACCTTAAAGTCTGA 999 0.4595 MAMQTVYLKEHERMGHSSVGQLSSVTSAPWWGSQSVYGDSCGQIKPFSLEFSNYVDHFAANKNSVRGAEQLFDKGLTTQFTIFSDDCKMSGEAQNLEATLSLQPSVTVAEPRNRFELGFNQPMICAKYPYMDQFYGLFSAYGPQIPGRMMLPLNLSTDDGPIYVNAKQYHGIIRRRQSRAKAVQENKLIKRSKPYMHESRHLHAMRRPRGCGGRFLNTRNSSDGNGKSGSELHKKTGGLGRHMQSSASQSSEVLQSEVGTLNSSKETNGSSPNISGSEVTSMYSLGGLDSFAVNHLGSAIHHSLADMIDGGHGIIMPTKWVGAAGSCFNLKV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2397 332 ProSiteProfiles NF-YA/HAP2 family profile. 158 218 IPR001289 GO:0003700|GO:0006355
Lja5g2397 332 Gene3D - 158 220 - -
Lja5g2397 332 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 331 IPR001289 GO:0003700|GO:0006355
Lja5g2397 332 SMART cbf3 157 218 IPR001289 GO:0003700|GO:0006355
Lja5g2397 332 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 161 215 IPR001289 GO:0003700|GO:0006355
Lja5g2397 332 PRINTS CCAAT-binding transcription factor subunit B signature 192 215 IPR001289 GO:0003700|GO:0006355
Lja5g2397 332 PRINTS CCAAT-binding transcription factor subunit B signature 161 183 IPR001289 GO:0003700|GO:0006355
Lja5g2397 332 MobiDBLite consensus disorder prediction 206 275 - -
Lja5g2397 332 MobiDBLite consensus disorder prediction 241 275 - -
Lja5g2397 332 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2397 Lja-Chr5 45660840 45665057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2397 115 332 CCAAT-HAP2 Transcription Factor Family AT3G05690 50.216 2.99e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lja5g2397 CBFB_NFYA 1.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2397 K08064 - gmx:100808195 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0628 1 5779416 5783131 Lja5g2397 5 45660840 45665057 PCT